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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN14729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GeBP | ||||||||
Protein Properties | Length: 319aa MW: 35929.9 Da PI: 10.018 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120.2 | 1.1e-37 | 57 | 152 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG+++++a++g+s ++d+ fy+++k+++++ ++k+qlveK+rrLKkK+++ +k++sgke+sf+++hd+ +fe+s++iW KHN14729.1 57 LFQRLWTDEDEIGLLQGFLEYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLNKISSGKEVSFKSPHDRATFEISRRIWS 152 79*********************************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.8E-34 | 58 | 152 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTMKPNPLPP SSPSRRPLPK RSNTALIPIS SVADSSPKPL RTELIEEKKA LDDSRRLFQR 60 LWTDEDEIGL LQGFLEYTAQ RGSSHHNDTA LFYDQIKSKL QLGFNKNQLV EKLRRLKKKY 120 RNVLNKISSG KEVSFKSPHD RATFEISRRI WSNTAPITGP VEDDDEIITN PNFGNSAKMP 180 ISRKRSRPQK RELNDGSTLN RDNNCNSNSN NNNNNENCNS RLNLQGLIEE TVRSCVSPVL 240 KELACGTGGM GLGRGFALNP LQMPMPMSLM NLGIVGETAM DEKWRKQQIL ELEVYSKRLE 300 LVQNEIKVAL EELRSAGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN14729.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-159 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556486.1 | 0.0 | probable transcription factor At5g28040 | ||||
Refseq | XP_028222838.1 | 0.0 | probable transcription factor At5g28040 | ||||
Swissprot | F4K5T4 | 4e-86 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | A0A0B2Q407 | 0.0 | A0A0B2Q407_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA20G37240.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 1e-83 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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