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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN14486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 238aa MW: 26522.8 Da PI: 8.4981 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 69.5 | 1.1e-21 | 1 | 96 | 38 | 129 |
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrek 129 +LGfdk+s+t++WL++++k+aikelt+++ s+ s+ ++++ +s+ +++ ++++ + +++k ++ a ++ +++kesr+kararar+rt++k KHN14486.1 1 MLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEfsssSEGEVVSTIHQDLHQQQGVDLEEGKLKEPAAYCVKAKMKESREKARARARQRTSSK 96 8***************************66666333345344455555555555566666669999999999*********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 17.958 | 1 | 25 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.5E-16 | 1 | 96 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 10.304 | 79 | 96 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MLGFDKASNT LDWLFTKSKK AIKELTRSKH SADSFEFSSS SEGEVVSTIH QDLHQQQGVD 60 LEEGKLKEPA AYCVKAKMKE SREKARARAR QRTSSKVLCN ISGEGKVQDL KKKCPATENP 120 QILNQLRSPL QPPHPQDVGG EVPRDDDFNV IEESIVIRRK LKHTLMSSIH HQNAVIPKEA 180 SVNNSDYHSF PNLSPNWEAN NNGANGRSTF CAIASMNLST GLQIFGKSWE ECTNPHPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN14486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028246905.1 | 1e-177 | transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A0B2PYU7 | 1e-178 | A0A0B2PYU7_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA08G28691.1 | 1e-175 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 5e-08 | TCP family protein |
Publications ? help Back to Top | |||
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