PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 706aa MW: 81703.1 Da PI: 5.6393

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN14374.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.6	4.3e-23	98	182	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YAk++GF +r+++s ++++++e + ++C++eg++++++ + ++r+etrtgC a++++++ ++++w+v++++l+HnH++ KHN14374.1 98 NYYNTYAKDIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEAN-----SHRKETRTGCLAMIRLRLVDSNRWRVDEVKLDHNHSFD 182 69**************************************99888.....999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-20	98	182	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-29	302	395	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.631	588	624	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0011	599	626	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MTDDAMCSPN DKDLSLSPNL DITIDDGSPN NEQLLEVEDE GNELENECGQ LFEIDGSEPE 60 NGRDETTIVD SHSGESQGKD CPPPVVRMEF DTYDDAYNYY NTYAKDIGFA IRVKSSWTKR 120 NSKEKRGAVL CCNCEGFKTT KEANSHRKET RTGCLAMIRL RLVDSNRWRV DEVKLDHNHS 180 FDPERAQNSK SHKRMDSRAK RKVEPTLDVE VRTIKLYRMP VVDASGYGSS NSTEGGTSNI 240 SCSRRLKLKK GDPELISNYF CRIQLMNPNF FYVMDLNDDG QLRNVFWIDS RSRAAYSYFG 300 DVVAFDSTCL SNNYEIPLVA FVGVNHHGKS VLLGCGLLAD ETFETYIWLF RAWLTCMTGR 360 PPQTIITNQC KAMQSAIAEV FPRAHHRICL SQIMQSILGC FVQFQEYEAF QMALTKVIYD 420 SKTVDEFERA WDDLTQHFGI RNHEKLQTLH EEREHWAPVY SKDTFFAGIS DYEKGESVIP 480 FFKGHVHQQT SLKEFFEIYE LVQQKKHKTE VLDDFESRDL SSLLKTRCYY ELQLSKLYTN 540 AVFRKFQDEV VMMSSCFSIT QTQTSGSIVT YMVKEREGEE PARDARNFEV MYDNAGAEVR 600 CICSCFNFKG YLCRHALYIL NYNCVEEIPC QYILSRWRRD FKRLYVPHLS ADNVDISNPV 660 QCFDHLYKRA MQVVEEGMIS QDHYMLSWQT FKESLNKIRL VADKIE

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MTDDAMCSPN DKDLSLSPNL DITIDDGSPN NEQLLEVEDE GNELENECGQ LFEIDGSEPE  60
NGRDETTIVD SHSGESQGKD CPPPVVRMEF DTYDDAYNYY NTYAKDIGFA IRVKSSWTKR  120
NSKEKRGAVL CCNCEGFKTT KEANSHRKET RTGCLAMIRL RLVDSNRWRV DEVKLDHNHS  180
FDPERAQNSK SHKRMDSRAK RKVEPTLDVE VRTIKLYRMP VVDASGYGSS NSTEGGTSNI  240
SCSRRLKLKK GDPELISNYF CRIQLMNPNF FYVMDLNDDG QLRNVFWIDS RSRAAYSYFG  300
DVVAFDSTCL SNNYEIPLVA FVGVNHHGKS VLLGCGLLAD ETFETYIWLF RAWLTCMTGR  360
PPQTIITNQC KAMQSAIAEV FPRAHHRICL SQIMQSILGC FVQFQEYEAF QMALTKVIYD  420
SKTVDEFERA WDDLTQHFGI RNHEKLQTLH EEREHWAPVY SKDTFFAGIS DYEKGESVIP  480
FFKGHVHQQT SLKEFFEIYE LVQQKKHKTE VLDDFESRDL SSLLKTRCYY ELQLSKLYTN  540
AVFRKFQDEV VMMSSCFSIT QTQTSGSIVT YMVKEREGEE PARDARNFEV MYDNAGAEVR  600
CICSCFNFKG YLCRHALYIL NYNCVEEIPC QYILSRWRRD FKRLYVPHLS ADNVDISNPV  660
QCFDHLYKRA MQVVEEGMIS QDHYMLSWQT FKESLNKIRL VADKIE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN14374.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981560.1	0.0	uncharacterized protein LOC100796448
Refseq	XP_028204299.1	0.0	uncharacterized protein LOC114388164
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A445GSQ3	0.0	A0A445GSQ3_GLYSO; Protein FAR1-RELATED SEQUENCE 8 isoform A
TrEMBL	I1MFY4	0.0	I1MFY4_SOYBN; Uncharacterized protein
STRING	GLYMA15G13160.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]