PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14314.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 720aa    MW: 80914.5 Da    PI: 6.784
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14314.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.86.5e-172779456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  ++t+ q+ +Le++ + +++p++++r++LA+++gL+++qVk+WFqN+R++ k
  KHN14314.1 27 YKRLTSAQTARLERFIKDCPHPDEAQRRQLASEIGLETKQVKFWFQNKRTQIK 79
                56799********************************************9988 PP
2START133.91.8e-422274482205
                 HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 +a +a++elv+++  +ep W kss      +++ + + + f+++++      ++ea ++sg+v  ++ +lv  +ld+  +W + ++    ka+t++v++
  KHN14314.1 227 VAASAMEELVRLIRINEPCWIKSStqdgqLILQHENYEKMFPRTNNfkgvnLRVEATKDSGIVSINSIQLVDMFLDSD-KWINLFPtivtKAKTIKVLE 324
                 6789********************8887744555555555555555788999**************************.99888888888********* PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                 +g      galqlm+ ++ +lsplv  R+f f+Ry++q ++g+wvi+dvS ds ++++   s+  + ++pSg++i++++ng s vtwvehv++++++  
  KHN14314.1 325 NGlvgsrsGALQLMFEQMHVLSPLVQpREFQFLRYCEQIEEGVWVIADVSFDSFRQKT---SFFHSWRHPSGCMIQEMPNGCSMVTWVEHVEVDDKIQt 420
                 ***********************9977*********************9999999987...79*********************************999 PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqce 205
                 h+l++ l+++g+a g+ +w   lqr +e
  KHN14314.1 421 HQLYKDLIGTGIAYGTERWIMELQRIGE 448
                 ********************99999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-17679IPR009057Homeodomain-like
SuperFamilySSF466897.52E-162085IPR009057Homeodomain-like
PROSITE profilePS5007115.6942181IPR001356Homeobox domain
SMARTSM003894.0E-162385IPR001356Homeobox domain
CDDcd000861.83E-152382No hitNo description
PfamPF000461.5E-142779IPR001356Homeobox domain
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PROSITE profilePS5084842.834217452IPR002913START domain
SuperFamilySSF559618.52E-31220450No hitNo description
CDDcd088751.16E-98221445No hitNo description
SMARTSM002342.2E-30226449IPR002913START domain
PfamPF018521.8E-35227448IPR002913START domain
Gene3DG3DSA:3.30.530.205.8E-9245414IPR023393START-like domain
SuperFamilySSF559612.47E-9472680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MDSSMASVGG SGDEGSDNFN QGRRPSYKRL TSAQTARLER FIKDCPHPDE AQRRQLASEI  60
GLETKQVKFW FQNKRTQIKN QHERADNTAL RVENDRIHSK NLLMKKALKN MLCPSCGGAP  120
CQDDREHLMQ KMQHENSRLK EEHEKVSSLL ARYLEKQMSP PEFQQVFNIP IIGSSSHAPK  180
LENSSLNYEI GGSSSHGPSL YGMQIMDGHD HNLMGSEGIE KTLMLKVAAS AMEELVRLIR  240
INEPCWIKSS TQDGQLILQH ENYEKMFPRT NNFKGVNLRV EATKDSGIVS INSIQLVDMF  300
LDSDKWINLF PTIVTKAKTI KVLENGLVGS RSGALQLMFE QMHVLSPLVQ PREFQFLRYC  360
EQIEEGVWVI ADVSFDSFRQ KTSFFHSWRH PSGCMIQEMP NGCSMVTWVE HVEVDDKIQT  420
HQLYKDLIGT GIAYGTERWI MELQRIGERF ACFYVERIPI QDSGGVINSL EGRRSVMNFC  480
HRMIKVFCES LTMSGNLDFP LLKMENNSGV RVSIRKNRNH LGQPKGVIVV AATSIWLPLH  540
YMKVFEFLTD DRRRAQWDVL CCGNNANKVA HISNGIHPGN CISISRVINF NLSYLCFIEN  600
NALILQESFT TPMGSYVVYA PTDVASMISA INGEDSSMLP VLPSGFVISA DGEPNAALEA  660
FNSSDIERLG GSLLTVAFQI LASSPDGINM PNMESVAAVN SLLTSTILKV KDALNCNNLE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14314.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586853.10.0homeobox-leucine zipper protein HDG11
TrEMBLI1MG590.0I1MG59_SOYBN; Uncharacterized protein
STRINGGLYMA15G13950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]