PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14146.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 433aa    MW: 48827.8 Da    PI: 9.9857
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14146.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07128170346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eE ++l d+++++  + +  Ia +++  Rt +++k+r+++
       KHN14146.1 128 TWTKEETDQLFDLCERFDLR-FIVIADRFPSSRTVEELKDRYYS 170
                      7*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162823.8E-31101175IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007174.2E-8125174IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-6126172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-6128172IPR009057Homeodomain-like
CDDcd116582.97E-19129171No hitNo description
PfamPF054994.3E-6308370IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDAKDILGLP KNSFPSLEKK SRPPKESQRK PDGISREVYA LTGGLASLMP AIEASQLKKK  60
PLPLEKITWQ WLPFTSSARK DNLHLYHWVR VINGVPPTGD YSFAKYNKSV DVIKYTDEEY  120
DKYLSDPTWT KEETDQLFDL CERFDLRFIV IADRFPSSRT VEELKDRYYS VSRAILIARA  180
PSSGDVVAHS IVKEPYNVAQ EMERKRALSM VLSQTRQQER RDEEVLVEAK KIAEKRLPPK  240
VAGQSQFVAS NAGAEAIERA VPGETVSPSN VQLPMVAPDN ASTLASLRML RVYLRTYALE  300
QMVQAGNASA GLRTIKRIEQ TLQDLGVNLK PRVPTKAVCA EHLELRKEIL TWLNLQKQVQ  360
YKEAEGSSFR DGSYGETPGT PKHLHRGGDQ DRTFIPDSMN FGVERVGKKD QKRKAPGAPS  420
AHKRPRKLKA SDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A3e-21100185493DNA methyltransferase 1-associated protein 1
4iej_A3e-21100185493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948860.0BT094886.1 Soybean clone JCVI-FLGm-25A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226349.10.0SWR1-complex protein 4-like isoform X2
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A0B2PXW40.0A0A0B2PXW4_GLYSO; SWR1-complex protein 4
STRINGGLYMA03G38020.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]