PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13480.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 320aa    MW: 36745.8 Da    PI: 4.5222
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13480.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-1881134356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t++q++ Le+ Fe ++++  e++ +LAk+lg++ rqV +WFqNrRa+ k
  KHN13480.1  81 KKRRLTSKQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 134
                 56689***********************************************98 PP
2HD-ZIP_I/II126.98.9e-4181172293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl+++qv++LE++Fe e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlEkdy +Lk++yd lk++ ++L +e ++L+ee+++
   KHN13480.1  81 KKRRLTSKQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDVLKRDYDNLLQESDKLKEEVNS 172
                  9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-1973138IPR009057Homeodomain-like
PROSITE profilePS5007116.82776136IPR001356Homeobox domain
SMARTSM003892.0E-1678140IPR001356Homeobox domain
CDDcd000862.56E-1579137No hitNo description
PfamPF000461.3E-1581134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-1983143IPR009057Homeodomain-like
PRINTSPR000311.0E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5116132IPR000047Helix-turn-helix motif
PfamPF021834.4E-16136177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAGEKLHEGS SMTLLLQKER LTCSPELIRS FWVQNSESSF QGSKSLANVV NVTQRPFFQG  60
LEKEENGEDE DFGVCLNQPG KKRRLTSKQV QFLESNFEVE NKLEPERKVQ LAKELGMQPR  120
QVAIWFQNRR ARFKTKQLEK DYGVLKASYD VLKRDYDNLL QESDKLKEEV NSLKTRLIPR  180
EQEEQNLDDT SCDAVNSQHK EQRDLITNTV SENGSKVPLP VMVTSKQEDA NSAKSDVLDS  240
DSPHFTDGNQ FSLMEPADSS HAVEPDHSAF SQDEEDILSQ NILTMPFLPK VEDVCYDEPH  300
EDSCSFRFPV EDQTFCFWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARFKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-110AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553206.10.0homeobox-leucine zipper protein HOX20 isoform X1
RefseqXP_028213741.10.0homeobox-leucine zipper protein HOX20-like
TrEMBLA0A0B2PWH30.0A0A0B2PWH3_GLYSO; Homeobox-leucine zipper protein HAT5
STRINGGLYMA08G40705.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-42homeobox 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]