PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN13255.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 345aa MW: 38017.4 Da PI: 6.5779 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v+ +G+g+W++++++ g++R++k+c++rw +yl KHN13255.1 14 RGLWTPEEDAKILAYVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3e-14 | 70 | 110 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T++E++l+++++ G++ W++Ia++++ gRt++++k++w++ KHN13255.1 70 FTPQEEDLIINLHGAIGSR-WSLIAKRLP-GRTDNDVKNYWNT 110 9******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.371 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.84E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.953 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.2E-13 | 70 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-10 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MRRPPCCDKS NVKRGLWTPE EDAKILAYVA NHGTGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDGF TPQEEDLIIN LHGAIGSRWS LIAKRLPGRT DNDVKNYWNT KLRKKLMKMG 120 IDPVTHKPVS QVLSDLGSIS GLPNTTNQMA FVNKDLMMSN MPPTKTEPSD SNKSMVEHTQ 180 EGQVHSWEHH IPYQVIINSE NVQPQVLSEA ASSTSSSSSS NLTQLGSPQS YSCQTPQAQI 240 SPPCSSFDWS EFLHSDSFNW SLNPPSGLMQ SEAELSDNTK SNGHDMQGAA SEGSGSGSGA 300 VACGASMEYQ INKQCEAHSF VDGILDRDSE IRAAFPQLLD ASFDY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN13255.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-177 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028197172.1 | 0.0 | transcription factor MYB35-like | ||||
TrEMBL | A0A445HC55 | 0.0 | A0A445HC55_GLYSO; Transcription factor MYB35 | ||||
STRING | GLYMA13G04920.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28470.1 | 2e-84 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|