PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN13226.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 375aa MW: 42686.3 Da PI: 8.2344

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN13226.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.3e-54	8	133	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +pGfrFhPtdeelv++yLk+k+++k+l++ e ik+vdiyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s++g+ + KHN13226.1 8 MPGFRFHPTDEELVDFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCI 105 79*************************.89***********9888999***************************************** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkk+Lvfy+gra kg ktdW+mhe+rl KHN13226.1 106 GLKKSLVFYRGRAAKGMKTDWMMHEFRL 133 ************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.2	7	164	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-57	7	164	IPR003441	NAC domain
Pfam	PF02365	4.3E-26	9	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MERIDDVMPG FRFHPTDEEL VDFYLKRKIQ QKSLPIELIK QVDIYKYDPW DLPKLAGTGE 60 KEWYFYCPRD RKYRNSARPN RVTRAGFWKA TGTDRPIYSS EGKCIGLKKS LVFYRGRAAK 120 GMKTDWMMHE FRLPCISDSS PPKKLSDRSL PPNDSWAICR IFKKTNSLSL AQKALSLPLI 180 SQLPGGIVSD MFTQGLKCHN IGSPAIQFCG DKQDELHQVS NNAINNNFSA SNIPTYKLIN 240 NSTVSKPSPQ SPVSDGDLAD NFIFYSSWPT KCCTLDPTSM LSPNPDYIEF EDPNQQHYSG 300 FSINLPQDMK QNMSTETGTK EQDHQWETTI GMRTTGYPFS LSPPYDAWKA SSVAWESRPC 360 PSDMSTTYST NKCYT

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MERIDDVMPG FRFHPTDEEL VDFYLKRKIQ QKSLPIELIK QVDIYKYDPW DLPKLAGTGE  60
KEWYFYCPRD RKYRNSARPN RVTRAGFWKA TGTDRPIYSS EGKCIGLKKS LVFYRGRAAK  120
GMKTDWMMHE FRLPCISDSS PPKKLSDRSL PPNDSWAICR IFKKTNSLSL AQKALSLPLI  180
SQLPGGIVSD MFTQGLKCHN IGSPAIQFCG DKQDELHQVS NNAINNNFSA SNIPTYKLIN  240
NSTVSKPSPQ SPVSDGDLAD NFIFYSSWPT KCCTLDPTSM LSPNPDYIEF EDPNQQHYSG  300
FSINLPQDMK QNMSTETGTK EQDHQWETTI GMRTTGYPFS LSPPYDAWKA SSVAWESRPC  360
PSDMSTTYST NKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-53	9	167	17	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN13226.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-112	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014621473.1	0.0	protein FEZ
Refseq	XP_028197111.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	2e-91	FEZ_ARATH; Protein FEZ
TrEMBL	A0A445HBZ0	0.0	A0A445HBZ0_GLYSO; Putative NAC domain-containing protein 94
TrEMBL	K7LXH4	0.0	K7LXH4_SOYBN; Uncharacterized protein
STRING	GLYMA13G05350.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	5e-94	NAC domain containing protein 94

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]