PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN13213.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 358aa MW: 40738.5 Da PI: 6.4384

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN13213.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.2	2.2e-55	20	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv ++ + + ++i e+d++k+ePwdLp ++k +ekewyfF+ rd+ky+tg+r+nrat gyWkatgkd+e+++ ++l KHN13213.1 20 LPPGFRFHPTDEELITHYLSQKVLDSCFCA-RAIGEADLNKCEPWDLPWMAKMGEKEWYFFCVRDRKYPTGQRTNRATGVGYWKATGKDREIYK-AKAL 116 79**********************9888.89***********8888899************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 +g+kktLvfykgrap+gekt+Wvmheyrle KHN13213.1 117 IGMKKTLVFYKGRAPSGEKTSWVMHEYRLE 146 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-62	16	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.27	20	170	IPR003441	NAC domain
Pfam	PF02365	1.6E-29	21	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MQAMENIHQR EILEEQRFEL PPGFRFHPTD EELITHYLSQ KVLDSCFCAR AIGEADLNKC 60 EPWDLPWMAK MGEKEWYFFC VRDRKYPTGQ RTNRATGVGY WKATGKDREI YKAKALIGMK 120 KTLVFYKGRA PSGEKTSWVM HEYRLEDEHS VHNPPKKAMN DWAICRIFQK SNGGKKMPIS 180 GLVRFSNFAK DMPSLMDSSP YNDSESKPVL GESSQPTCFS DPNQSEDQRT QDENIADSYE 240 TLMLASSYSS NPSDISPASW TFSKSAPTVS HQSLQVGNSH SSDYFMLHQE QSMLGMLIEN 300 HGASAGQRTQ KAQDNKGSDA DMSSVMYNNY EMFQRSFGNQ EYSSPSVGHV YSSGLWGF

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MQAMENIHQR EILEEQRFEL PPGFRFHPTD EELITHYLSQ KVLDSCFCAR AIGEADLNKC  60
EPWDLPWMAK MGEKEWYFFC VRDRKYPTGQ RTNRATGVGY WKATGKDREI YKAKALIGMK  120
KTLVFYKGRA PSGEKTSWVM HEYRLEDEHS VHNPPKKAMN DWAICRIFQK SNGGKKMPIS  180
GLVRFSNFAK DMPSLMDSSP YNDSESKPVL GESSQPTCFS DPNQSEDQRT QDENIADSYE  240
TLMLASSYSS NPSDISPASW TFSKSAPTVS HQSLQVGNSH SSDYFMLHQE QSMLGMLIEN  300
HGASAGQRTQ KAQDNKGSDA DMSSVMYNNY EMFQRSFGNQ EYSSPSVGHV YSSGLWGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	17	176	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	17	176	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	17	176	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	17	176	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	17	176	17	174	NAC domain-containing protein 19
3swm_B	2e-53	17	176	17	174	NAC domain-containing protein 19
3swm_C	2e-53	17	176	17	174	NAC domain-containing protein 19
3swm_D	2e-53	17	176	17	174	NAC domain-containing protein 19
3swp_A	2e-53	17	176	17	174	NAC domain-containing protein 19
3swp_B	2e-53	17	176	17	174	NAC domain-containing protein 19
3swp_C	2e-53	17	176	17	174	NAC domain-containing protein 19
3swp_D	2e-53	17	176	17	174	NAC domain-containing protein 19
4dul_A	2e-53	17	176	14	171	NAC domain-containing protein 19
4dul_B	2e-53	17	176	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN13213.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	2e-90	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028196926.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-117	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A445HBZ1	0.0	A0A445HBZ1_GLYSO; NAC domain-containing protein 100 isoform A
STRING	GLYMA13G05540.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-118	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]