PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN13083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 32953.1 Da PI: 8.2029 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 4.9e-07 | 15 | 60 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e+ +++ a + + ++ +W ++a++++ g+t +++ ++ KHN13083.1 15 EWTREDNKKFESALAIYDKDtpdRWFKVAAMIP-GKTVFDVIKQYRE 60 7********************************.****999999885 PP | |||||||
2 | Myb_DNA-binding | 42.4 | 1.7e-13 | 115 | 159 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r + ++t+ q+ s+ qky KHN13083.1 115 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 159 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.587 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-8 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.26E-11 | 14 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.7E-6 | 15 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.98E-7 | 15 | 61 | No hit | No description |
PROSITE profile | PS51294 | 19.353 | 108 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.94E-16 | 110 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-17 | 111 | 163 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 7.6E-11 | 112 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 112 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-11 | 115 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.04E-9 | 115 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MPNSNWFVQE SLSTEWTRED NKKFESALAI YDKDTPDRWF KVAAMIPGKT VFDVIKQYRE 60 LEEDVSEIEA GHVPIPGYLA SSFTFELVDN HNYDGCRRRL APVRGSDQER KKGVPWTEEE 120 HRRFLMGLLK YGKGDWRNIS RNFVVTKTPT QVASHAQKYY IRQKVSGGKD KRRPSIHDIT 180 TVNLTETSAS DKNKPPVIAP QQKLNSMSKV QLDWTSSHYN DGSLMVFNPN SDDLFVSSSS 240 DVTSMALKMQ GQDLYECALR EAYAKVKVPG FSMAPRDFNN EAVFGIHAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-16 | 16 | 78 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN13083.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-162 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028216790.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Refseq | XP_028216796.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 6e-91 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0B2PZB3 | 0.0 | A0A0B2PZB3_GLYSO; Transcription factor MYB1R1 | ||||
TrEMBL | A0A445LU21 | 0.0 | A0A445LU21_GLYSO; Transcription factor DIVARICATA isoform A | ||||
STRING | GLYMA02G42140.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 8e-92 | MYB family protein |
Publications ? help Back to Top | |||
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