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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN12936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 306aa MW: 34096.7 Da PI: 9.9989 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.4e-12 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky KHN12936.1 55 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 99 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.92E-16 | 49 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 50 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-6 | 53 | 105 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-18 | 53 | 102 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-10 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-10 | 55 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-7 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MVSKNPNPSE AFYLDPSGMS LPGILPFAAA ATATADSFED PAKKTRKPYT ITKSRESWTE 60 PEHDKFLEAL QLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKVQKSGTNE HLPPPRPKRK 120 AAHPYPQKAS KTAPVLSQVS GSFQSSSALL EPGYILKHDS SAMPKTPIIN TAVSSWSNNS 180 LQKTTSVLHG QKQKVNNCCS SSRSPRAQLV GESNGQRNNS HPLRGKVLPD FAEVYSFIGS 240 VFDPNVTGHV QKLKRMDPID VETVLLLMRN LSINLASPDF EDHRRLLASY EVEPEVDKYK 300 CRLNHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00560 | DAP | Transfer from AT5G52660 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN12936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556126.1 | 0.0 | protein REVEILLE 6 isoform X3 | ||||
Swissprot | Q8H0W3 | 1e-117 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0B2PUC4 | 0.0 | A0A0B2PUC4_GLYSO; Transcription factor ASG4 | ||||
STRING | GLYMA20G30250.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 2e-96 | MYB_related family protein |
Publications ? help Back to Top | |||
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