PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12904.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 283aa    MW: 32153.8 Da    PI: 4.536
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12904.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-0937612348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W+ Ia +++ gRt++++k++w+++l
       KHN12904.1 37 RWSVIAGHLP-GRTDNEIKNYWNSHL 61
                     5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-82971IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-133262IPR009057Homeodomain-like
PfamPF002494.2E-73661IPR001005SANT/Myb domain
PROSITE profilePS500906.6553761IPR017877Myb-like domain
CDDcd001674.39E-63761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MHVCVIHIFR SHLTFELQLL FSSFLFSCEL TRTFDCRWSV IAGHLPGRTD NEIKNYWNSH  60
LRRKIYCFMR SLNESLPPID MAAINSATSK RRVRGSRNKP TTEEEKNIAL SQNSFESMPS  120
CNREEGEEIS MMDACYEMEG ITVSSKAASY PSLEDSLGPY HHWSDDEIMK LSNMFENGVL  180
VNPCGNDLTL KEEPNGNECG QMNVDVMGTD QSKNNGVWNS SNGESGEWYP NCSSVNSVID  240
YQWSDWDMGG SVQSNNQWNL CDDQVMNCLW STGIGEINYG FHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12904.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533213.10.0transcription factor MYB13
RefseqXP_028180329.10.0transcription factor MYB13-like
TrEMBLA0A0B2PYY70.0A0A0B2PYY7_GLYSO; Transcription factor MYB12
STRINGGLYMA09G04370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-15myb domain protein 12
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]