PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12803.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 360aa    MW: 41826.3 Da    PI: 7.9888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12803.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052154177123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C+ Cg+ ++++ +Lk+H +  H
  KHN12803.1 154 YTCGVCGRKCKTHLDLKKHFKQlH 177
                 9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.699154182IPR007087Zinc finger, C2H2
PROSITE patternPS000280156177IPR007087Zinc finger, C2H2
CDDcd061672.02E-11157288No hitNo description
Gene3DG3DSA:3.40.50.10103.8E-5219284IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKNSLFLLHN ANTIHFNLHS QITLPSIPLT TITTTKPFPH NRHFPRIQCC SNNNNNNSIE  60
IDMVKNSQGI YAPKASKVVV LWDLDNKPPR GPPYDVAISL KTLAARFGDL VDFSAYANRH  120
AFVHLPQWVL QQRRDRKNLD ILERKGIITP PEPYTCGVCG RKCKTHLDLK KHFKQLHQRE  180
RQKKLNRLKS LKGKKRHRFK ERFLRGNHKY DDAARTLVVP KDKPQAADWA LKRQMVHSMS  240
RGIDWLFLVS DDSDFSEMLR RAREADLGTV VVGDWDRALG RHADLWLWVP WSGVENGEVG  300
DLVPKRRREN SRRREQGEEH GFGLEDDDDG EDEELGQEYM LLYDDDDDDE GEEEDGLYIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12803.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160873.11e-178hypothetical protein PHAVU_001G023900g
TrEMBLA0A445GBB20.0A0A445GBB2_GLYSO; Uncharacterized protein
STRINGGLYMA17G35830.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-134C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]