![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN12676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 611aa MW: 67827.7 Da PI: 6.3136 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 400 | 437 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt++qV +WF N R + KHN12676.1 400 FEHflHPYPKDSEKIMLARQTGLTKNQVANWFINARVR 437 665559******************************88 PP | |||||||
2 | BELL | 121.1 | 4.9e-39 | 271 | 342 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+ kk+kLls+l+eVdkrY+qy++q+q+v+ssF++v g+g+a+pYt+lAl++iSrhFrcL dai++qi KHN12676.1 271 ERQNFLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVSGCGAAEPYTALALRTISRHFRCLHDAISGQI 342 6788889****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.4E-57 | 192 | 340 | IPR006563 | POX domain |
Pfam | PF07526 | 5.2E-48 | 199 | 339 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.455 | 378 | 441 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-12 | 381 | 442 | No hit | No description |
SMART | SM00389 | 2.0E-9 | 381 | 445 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-17 | 382 | 448 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-28 | 384 | 447 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.1E-17 | 398 | 437 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 611 aa Download sequence Send to blast |
MYPNQAFSSG SYADMLSGNP LLPHNYGETV GGQNELKFIT SMRDTMIMQP IDGHPNAAAT 60 TGNPDSFENA GDSHSHVIPR TTQLGLVDNE QNVQNQGLSL SLGSVMPSIA SVPTFPYQYP 120 GTSFSSLMSA CVPNLKGTSS LKDDEASLQR ELRNAECMAS LASSGGFHKR DGLYNPQHPS 180 MCLGEGQSHG SQGFSNNMLN SQYLKAAQEL LDEIVNVRKQ TSLEKQPSFR DVGLDGSKDS 240 DGKSTTQSVQ ISSGPNGSSA ANSSCELSPT ERQNFLDKKT KLLSMLDEVD KRYRQYCHQM 300 QIVVSSFDMV SGCGAAEPYT ALALRTISRH FRCLHDAISG QIQVTQRNLG EQEGIPRLRY 360 VDQQVRQQKA LQQLGVMRQA WRPQRGLPET SVSILRAWLF EHFLHPYPKD SEKIMLARQT 420 GLTKNQVANW FINARVRLWK PMVEEMYKEE FDVQASDNKR EESQDNLITV DDSVQHHGLK 480 LDHADRGIQS SDHGENAMDP RIGKLQVDQR FNMNNNNSPY YGDGCIMAST PATYDLSELG 540 NIAVGGHVSL ALELRNCESE GFGVSNDDMH KRRKKTLASS PEADLLDYHF TDTGKQQNKF 600 GNPHLLHEFV V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 2e-16 | 387 | 445 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 387 | 445 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 387 | 444 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 387 | 444 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 2e-16 | 387 | 445 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-16 | 387 | 445 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN12676.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549446.2 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_014625504.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_028210787.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_028210788.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A445GBV7 | 0.0 | A0A445GBV7_GLYSO; BEL1-like homeodomain protein 7 | ||||
TrEMBL | I1MXZ4 | 0.0 | I1MXZ4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G37260.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-103 | BEL1-like homeodomain 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|