PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN12467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 326aa MW: 37603.6 Da PI: 8.5191 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.4 | 5.8e-16 | 12 | 51 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +++ + tf kR++g+lKKA+E S+LC+++v vii++++ KHN12467.1 12 KEEKACEKTFHKRKKGLLKKAYEFSTLCAVDVGVIIYAPK 51 55556667*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.5E-14 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.619 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-18 | 2 | 97 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.46E-17 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 5.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-15 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MGRGRIPMEL IKEEKACEKT FHKRKKGLLK KAYEFSTLCA VDVGVIIYAP KYLNEPETWP 60 QDQDSREVKR VIQKYHNTTS DRHPKVYDVQ EYFNDRMKKI ESEISKVHKE EIKLMYPTWN 120 ESYNTLGEKQ LRMFVGILDA KLDACNQRMN MLKQDSKGKG IAKSDKIETL TPYMASNLGS 180 HLNFMSQTQL FTPSDNNQVA FYPFQLSQSS QPSTFHGGQS CVQLMEKNAM VDWANQVGVG 240 ANCDPKMGVL KEDQSNKTQN SSPCYYNGNM QTTQSYMQTL HSLLQYDATF QILSNQLGQP 300 PGFEHNSFYD SNMFQSQFFN YMHGKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN12467.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028243807.1 | 0.0 | MADS-box protein EJ2-like | ||||
TrEMBL | A0A445JCM8 | 0.0 | A0A445JCM8_GLYSO; Agamous-like MADS-box protein AGL82 | ||||
STRING | GLYMA08G10080.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-22 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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