PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12346.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 477aa    MW: 53896.7 Da    PI: 5.817
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12346.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-35141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d+++++++sws+++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++k+ll++i+
    KHN12346.1  14 FLLKTYEMVDDASTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPER---------WEFANDEFLKDQKHLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    KHN12346.1 102 RRK 104
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.09E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-3710103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDGAPQSAGG PAPFLLKTYE MVDDASTNDI VSWSSTNNSF VVWNPPEFAR LLLPTYFKHN  60
NFSSFIRQLN TYGFRKIHPE RWEFANDEFL KDQKHLLKNI HRRKPIHSHS HPPGSLVDPE  120
RAAFEEEIDK LSREKNSLES NIRNFKQHQS TAKPKLEDFL QRLDGVDKRQ KQLLNFFEKA  180
LQNPTFVEHL SRKIESMDLS AYKKRRLPQV DHVQPVAESS LVDNHSNFRM EFGNVFRQDF  240
SNKLRLELSP AVSDMNLVSR STQSSNEDGE SSQKKLSEVE PRGVQTRTAL TFAPETLELA  300
DTGASFTFKM DSCLSRRATT AESSKLISLE PSSEEGDSLS CQLNLTLASC PLQVNRNSYS  360
ARSPQIDCQE IGKLAESRFF ANGKESDSGV SSNLNVAAEA TNLASSQEAP SNNQVNPAPP  420
DRVNDVFWEQ FLTERPGCSD NEEAISNYRA NPYDEQDEGR STHGISRNIK NMDQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-22810320129Heat shock factor protein 1
5d5v_B8e-22810320129Heat shock factor protein 1
5d5v_D8e-22810320129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976510.0BT097651.1 Soybean clone JCVI-FLGm-26G4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340359.10.0heat stress transcription factor 15
RefseqXP_028243491.10.0heat stress transcription factor A-5-like isoform X1
SwissprotQ94BZ51e-166HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A445JCY60.0A0A445JCY6_GLYSO; Heat stress transcription factor A-5
TrEMBLI1KS630.0I1KS63_SOYBN; Uncharacterized protein
STRINGGLYMA08G11460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-168HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]