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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 303aa MW: 34715.3 Da PI: 8.8585 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.7 | 6.4e-13 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+ +r+ kR++ +lKK eELS LC++e++ i+++++ KHN11876.1 10 FIGNDFKRKNVCKKRKQSLLKKTEELSMLCGVEACAIVYGPN 51 6889999999999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-12 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.316 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.84E-24 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 9.81E-19 | 4 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-12 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAPGKLKLTF IGNDFKRKNV CKKRKQSLLK KTEELSMLCG VEACAIVYGP NDPRPVIWPS 60 ELGVENVLRK FMSMPQLEQS KKMVNQESFI AQRIMKSKEK LQKIVKENKE IEMSLFMAHC 120 FKTGMFQPDI NMTTADMNVL SSIIEQNLKD IDKRMEMLKA NQVIPNQPDV ETSTLQPQIM 180 HTLTYQPPMQ TFAFQPQIQI SEFQTQIQTP EFPTQTYQSK MQTQTFQPQM QSAALFQPRM 240 QSPAFFQPQI MQTPSYQPHT QTPALEDMTL LNYGNGLGMQ MQQFNGNGYE TTMPAFGGAN 300 FPL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11876.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235739 | 0.0 | AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537344.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_028186496.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0B2PR65 | 0.0 | A0A0B2PR65_GLYSO; Agamous-like MADS-box protein AGL80 | ||||
STRING | GLYMA11G30482.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35983 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-39 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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