PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11873.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 267aa    MW: 30672.3 Da    PI: 6.5138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11873.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.9e-164586243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +i n+s r+ t  kR++g+lKK  ELS+LC+++++ i++s++
  KHN11873.1 45 FIANDSARKLTCKKRKKGLLKKVDELSTLCGINACAIVYSPN 86
                899*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.3533686IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-203695IPR002100Transcription factor, MADS-box
CDDcd002661.90E-1837120No hitNo description
PRINTSPR004047.3E-63858IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-2339130IPR002100Transcription factor, MADS-box
PfamPF003191.1E-164587IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-65873IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MYGMTFKVTF QYAKPVCTFT QNIIPATNAY WKKIKLTTKK VQLAFIANDS ARKLTCKKRK  60
KGLLKKVDEL STLCGINACA IVYSPNDPEP EVWPSHWGVH RVLEKFTTMP ELEQSKKMVN  120
QESFTAQRIQ KGNEQMMKLM KDNREKELTL FMFQCLNAGR VQPNNNVTED DLNVFSSMID  180
QNLKDLSERM EALKVNEMTP NIDQSRMEIP TLNYGHGSDI NIADPMQSQW FMDHLLNCGD  240
GDETLIMPPF DDANLQLQTD FMSNLLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15660KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186499.11e-162agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-46AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0B2PVV70.0A0A0B2PVV7_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA18G05916.12e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-46AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]