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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 51aa MW: 5516.12 Da PI: 6.7316 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 10 | 47 | 2 | 37 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-H CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtl 37 g+W++ + + + +a + + ++ +Wk +ar +g g+t+ KHN11864.1 10 GSWSAKDNKAFERALAVYDKDtpdRWKDVARAVG-GKTP 47 89********************************.**98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.72E-9 | 5 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-4 | 11 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
MASSSMSATG SWSAKDNKAF ERALAVYDKD TPDRWKDVAR AVGGKTPDEP L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-17 | 1 | 49 | 1 | 48 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11864.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 3e-54 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006575120.1 | 3e-28 | protein RADIALIS-like 3 | ||||
Refseq | XP_028184519.1 | 3e-28 | protein RADIALIS-like 3 | ||||
Swissprot | Q9SIJ5 | 1e-17 | RADL2_ARATH; Protein RADIALIS-like 2 | ||||
TrEMBL | A0A0B2PW03 | 3e-28 | A0A0B2PW03_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA02G18210.1 | 1e-27 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-15 | RAD-like 6 |
Publications ? help Back to Top | |||
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