PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11642.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 164aa    MW: 18190.5 Da    PI: 9.1816
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11642.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-171564255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++GVr ++ +gr+v+eIr p   g+++r++lg+fg++e+Aa+a++ a+  l+g
  KHN11642.1 15 AFRGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFGSPEMAARAYDSAAFFLKG 64
                58****888.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-281474No hitNo description
SuperFamilySSF541711.77E-191473IPR016177DNA-binding domain
PROSITE profilePS5103220.61572IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-281573IPR001471AP2/ERF domain
SMARTSM003806.8E-321578IPR001471AP2/ERF domain
PRINTSPR003676.7E-111627IPR001471AP2/ERF domain
PfamPF008475.9E-111664IPR001471AP2/ERF domain
PRINTSPR003676.7E-115474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MCSISEKAKR KRQSAFRGVR KRSWGRYVSE IRLPGQKTRI WLGSFGSPEM AARAYDSAAF  60
FLKGTSATLN FPDLVHSLPR PLSSSRRDIQ SAAAEAALHS PPPKEEQESI FTSTTTSSFH  120
DVMEAPLMSP LRVDSTFGDF SWDQLFDFND DILIVGSTSA TLVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-151677668ATERF1
3gcc_A3e-151677668ATERF1
5wx9_A9e-1513721272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534428.21e-114dehydration-responsive element-binding protein 3
SwissprotQ9LYD34e-32DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445J5321e-116A0A445J532_GLYSO; Dehydration-responsive element-binding protein 3
STRINGGLYMA09G36840.21e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]