PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11485.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 432aa    MW: 50530.9 Da    PI: 9.4268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11485.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14226313998
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++ +++ l +p +f++e ++k+  +  + l  ++ r W vk+  + +sg+++l+ GW +Fvk+n+Lk g ++vF+ +++ + +++v +fr
  KHN11485.1 226 SYIERSVLFMPGNFITEDQQKE--DDHVFLWISNERAWHVKFYLSHSSGQILLSIGWMDFVKDNNLKIGNVCVFEQIKKPGISFRVVIFR 313
                 4455667999*****9997664..44799999999*******88*******************************888888888888887 PP
2B347.82.6e-153494241297
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 +++ + +pkkf+++h++++++  ++tl+    rsW+v+l  + ++ r  +t+GW+eF ++ +L++gD++ F+l+++++f  v+ v+
  KHN11485.1 349 QLCHMNVPKKFIKNHDIDNTK--EVTLQV-GKRSWNVTL--DCYG-R--FTSGWSEFMSQCDLEAGDVCYFELIDKKKF--VFEVR 424
                 567899*********999655..677655.77*******..6665.4..89***********************98998..55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.038190IPR003340B3 DNA binding domain
CDDcd100171.03E-8187No hitNo description
SMARTSM010192.5E-4390IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-141097IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-131299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-17211313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-18213313IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-11217313No hitNo description
PROSITE profilePS5086312.774218315IPR003340B3 DNA binding domain
SMARTSM010190.01219315IPR003340B3 DNA binding domain
PfamPF023621.3E-11226313IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-17337423IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.039338427IPR003340B3 DNA binding domain
CDDcd100173.25E-12340427No hitNo description
SuperFamilySSF1019365.89E-17340430IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-12341427IPR003340B3 DNA binding domain
PfamPF023628.6E-12349424IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MQYTILTISS WQRIPRSFVN KCWEGMSNPV VLLLRNGAEW KVKWKKLDVD VWLIDDWKEF  60
AGFCCLDQDH LLVFKYMGKS RFQVVIFYQN GLEMQYPSME ETIDGNSLCQ PKRAKSPLPF  120
SSSIKKVKTN PRKEPSSYPG HDHDVKTEPA QSQRRKVELS KKFHADDLDD AKPKKRGGRR  180
RRIMCSNSRA IKRDELLQDT ESSTALERAK AFRTDNPSFI RAMGKSYIER SVLFMPGNFI  240
TEDQQKEDDH VFLWISNERA WHVKFYLSHS SGQILLSIGW MDFVKDNNLK IGNVCVFEQI  300
KKPGISFRVV IFRDPEESSP FKFPDSESRR FNNNKVSENH FTISIKPSQL CHMNVPKKFI  360
KNHDIDNTKE VTLQVGKRSW NVTLDCYGRF TSGWSEFMSQ CDLEAGDVCY FELIDKKKFV  420
FEVRFKRCIS ID
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211029.21e-155B3 domain-containing transcription factor VRN1-like
TrEMBLK7N2T30.0K7N2T3_SOYBN; Uncharacterized protein
STRINGGLYMA20G24222.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-17B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]