PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

KHN11326.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 1393aa MW: 158670 Da PI: 8.3042

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN11326.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.5e-21	114	205	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 fY++YA++ GFsvrk + k+ ng + +r+f C +eg+++ + + ke+r+r++tr++Cka l+++++k ++w+vtk++ eHnH l KHN11326.1 114 FYKRYAYQHGFSVRKGRFIKR--NGIMRRRDFFCHREGRSSLKIIEPLKEQRNRESTRCECKAYLRISLQKshdifPSEWRVTKFVVEHNHVLL 205 9**************87776..99****************999*****************99865555579**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-18	114	205	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-27	327	418	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 1393 aa Download sequence Send to blast
MINNTMGEGN TSTRDMSTDK INVDLNEYPI EDISLENGYS GTVSEHFDHD IVANDVLEVE 60 EIETYEKENI VSSSQNIEIN EFAEEVDRDE TYNETNIVPF VGQIFLSEEE AFAFYKRYAY 120 QHGFSVRKGR FIKRNGIMRR RDFFCHREGR SSLKIIEPLK EQRNRESTRC ECKAYLRISL 180 QKSHDIFPSE WRVTKFVVEH NHVLLTQSEV RFLPANRTIS EDDIERIFLL KEGGLSVRQL 240 MRVIELEKNV KHGYLPFIER DIRNLFVKTK KKVERNDAKD LLKYCEDAKK SCSKFQYAYT 300 LDEERRLEHI FWSPASCSDW YQKYGDVVVF DTTYKVNSYE MPFGIFVGMN SHGKTVLFGC 360 ALLRNETISA FRWLMKTFIS LMKKPPKTIL TDQDPWMKEA ISKDLPSTKH SFCIWHITFK 420 FSSWFNAILR DKYSKWCSDF YELYKLETCE EFEHQWPKVV AKYNLQSNKH VKGLYEIRNY 480 WALAYLRDHF FGGMTTTGRS ESINAFIKRF INSHTSLSDF TKQVDVAIDD IKQKEDHDIM 540 LEKCKRINLK LMSPLQEQAH GVLTRFAFQK FQEEFERSTQ YSIHHENGNE FVLRYYKDAN 600 SRKHMVFWDV HAMQRKEVKE RLGHCLCLQS IIPHSLCHVT LPLIFLASNS SSSTQQHGRV 660 IIITHQQQCY IASATISCSY GNTTFSTNIG TRGGIEEGKE ISPMFPRLHV KDAEKRGPKA 720 PPRNKMALYE QFSIPSQNFA PGSTSLFPLP LRNYTGPTSS SHISSNQSIQ FCTSSMPSIL 780 AEKSQAYNSR KTNLTKFTQD DFINSKNSLK ALDGEDAFIS SGSAHRKNSY CSIIQNNKDE 840 GKLSCSNLSC SHKRLNSIRK VNSPGAVDLM SEQYEKNQIE EHTEVSQIGQ KPEEVLPHSL 900 DGFGDMTDAS LISLEKGKNS KSMNKEHRSL KEENRSISVD SLKTLQGSSV RTQEELAAFR 960 DQIKSRDHHI EKPAASELHK CSGELEIGRR CFLDKVNRNE DEETYSHYDA VNKYNSECTS 1020 VMDISPDNVV GAIGEQQFWK VRRTIINQQK IFVKQVSELH RLIKVQRLIA GSPHILLEDN 1080 LLHNKPPQKT STTQKFQSDF AGKKPSSVVK LDNKSVKVNT DEKATNSAVG KIPIPCISNI 1140 TKGHANQLPN YGHHLGNLAL GSADSNSKQP PSYVYPPPGN QWLVPVMSPS EGLVYKPIIG 1200 PCPPNAGFMA PIYGSCGTMS FNPLSKDASS DATLAPSSHQ KLGIISGSSL SQLPSFMNHP 1260 SSLSASAIEQ MGQSNGPENH HSCGEVNSAI LHQSSSNMSS PTSQMMSRNI STYHHSLKDK 1320 ELQRSTASSP SKRMSGEALP LFPLAPTFWQ SEDRNTQVEH RPRVIKAMPH NPKTASESAA 1380 RIFRSIQEER KHL

Sequence ? help Back to Top

Protein Sequence Length: 1393 aa Download sequence Send to blast

MINNTMGEGN TSTRDMSTDK INVDLNEYPI EDISLENGYS GTVSEHFDHD IVANDVLEVE  60
EIETYEKENI VSSSQNIEIN EFAEEVDRDE TYNETNIVPF VGQIFLSEEE AFAFYKRYAY  120
QHGFSVRKGR FIKRNGIMRR RDFFCHREGR SSLKIIEPLK EQRNRESTRC ECKAYLRISL  180
QKSHDIFPSE WRVTKFVVEH NHVLLTQSEV RFLPANRTIS EDDIERIFLL KEGGLSVRQL  240
MRVIELEKNV KHGYLPFIER DIRNLFVKTK KKVERNDAKD LLKYCEDAKK SCSKFQYAYT  300
LDEERRLEHI FWSPASCSDW YQKYGDVVVF DTTYKVNSYE MPFGIFVGMN SHGKTVLFGC  360
ALLRNETISA FRWLMKTFIS LMKKPPKTIL TDQDPWMKEA ISKDLPSTKH SFCIWHITFK  420
FSSWFNAILR DKYSKWCSDF YELYKLETCE EFEHQWPKVV AKYNLQSNKH VKGLYEIRNY  480
WALAYLRDHF FGGMTTTGRS ESINAFIKRF INSHTSLSDF TKQVDVAIDD IKQKEDHDIM  540
LEKCKRINLK LMSPLQEQAH GVLTRFAFQK FQEEFERSTQ YSIHHENGNE FVLRYYKDAN  600
SRKHMVFWDV HAMQRKEVKE RLGHCLCLQS IIPHSLCHVT LPLIFLASNS SSSTQQHGRV  660
IIITHQQQCY IASATISCSY GNTTFSTNIG TRGGIEEGKE ISPMFPRLHV KDAEKRGPKA  720
PPRNKMALYE QFSIPSQNFA PGSTSLFPLP LRNYTGPTSS SHISSNQSIQ FCTSSMPSIL  780
AEKSQAYNSR KTNLTKFTQD DFINSKNSLK ALDGEDAFIS SGSAHRKNSY CSIIQNNKDE  840
GKLSCSNLSC SHKRLNSIRK VNSPGAVDLM SEQYEKNQIE EHTEVSQIGQ KPEEVLPHSL  900
DGFGDMTDAS LISLEKGKNS KSMNKEHRSL KEENRSISVD SLKTLQGSSV RTQEELAAFR  960
DQIKSRDHHI EKPAASELHK CSGELEIGRR CFLDKVNRNE DEETYSHYDA VNKYNSECTS  1020
VMDISPDNVV GAIGEQQFWK VRRTIINQQK IFVKQVSELH RLIKVQRLIA GSPHILLEDN  1080
LLHNKPPQKT STTQKFQSDF AGKKPSSVVK LDNKSVKVNT DEKATNSAVG KIPIPCISNI  1140
TKGHANQLPN YGHHLGNLAL GSADSNSKQP PSYVYPPPGN QWLVPVMSPS EGLVYKPIIG  1200
PCPPNAGFMA PIYGSCGTMS FNPLSKDASS DATLAPSSHQ KLGIISGSSL SQLPSFMNHP  1260
SSLSASAIEQ MGQSNGPENH HSCGEVNSAI LHQSSSNMSS PTSQMMSRNI STYHHSLKDK  1320
ELQRSTASSP SKRMSGEALP LFPLAPTFWQ SEDRNTQVEH RPRVIKAMPH NPKTASESAA  1380
RIFRSIQEER KHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN11326.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF533695	0.0	EF533695.1 Glycine max clone BAC GM_WBb098N15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006585544.1	0.0	ELF3-like protein 2
Refseq	XP_006585546.1	0.0	ELF3-like protein 2
Refseq	XP_028244463.1	0.0	ELF3-like protein 2
TrEMBL	A0A445JH66	0.0	A0A445JH66_GLYSO; ELF3-like protein 2 isoform A
TrEMBL	K7L7Q5	0.0	K7L7Q5_SOYBN; Uncharacterized protein
STRING	GLYMA08G21115.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-150	FAR1-related sequence 11

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]