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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11281.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 306aa MW: 34325 Da PI: 4.8757 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128 | 4.4e-40 | 25 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp+e++++f n+hklFG+sn++k++k l+++++++am++++y++++ra dPv G+++ il+lq q+e +ael+l+ + KHN11281.1 25 ACAACKYQRRKCAPDCILAPYFPHERQRQFLNAHKLFGVSNITKIIKLLSPQDKDQAMRTIIYQSDMRATDPVGGCYRYILDLQAQIEYYRAELELVLQ 123 7*********************************************************************************************99877 PP DUF260 100 e 100 + KHN11281.1 124 Q 124 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.972 | 24 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-37 | 25 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MNNNNPNNNS NRISSPRNGN STTQACAACK YQRRKCAPDC ILAPYFPHER QRQFLNAHKL 60 FGVSNITKII KLLSPQDKDQ AMRTIIYQSD MRATDPVGGC YRYILDLQAQ IEYYRAELEL 120 VLQQLAIFRA QAQQQQQQQH GIYAPNNVNI AVNGDGEVLN ADPMGLYDQQ QHYQCLQPQQ 180 QEQYAMMHEN GHGSQNSDGT AFQEQINTWA VQNTAVSLSS LSLQGQGSNV SDGYDHKPVL 240 GIDMDSDERS ELGFESEELV HRSDEAVLFK IDDAVIKAEA DQCMQQAQDH DLKGAATSFT 300 LTNCTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-26 | 26 | 125 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-26 | 26 | 125 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11281.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028244866.1 | 0.0 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A445JH37 | 0.0 | A0A445JH37_GLYSO; LOB domain-containing protein 22 | ||||
STRING | GLYMA08G20550.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 3e-51 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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