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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN11249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 135aa MW: 15964.5 Da PI: 10.3123 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 62.9 | 6.4e-20 | 4 | 52 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 v+YkeC +NhAa+ G +DGC E++ + ++ l Ca CgCHRnFHR+++ KHN11249.1 4 VVTYKECWHNHAAARGRVIYDGCLEYLVD------QDNLICACCGCHRNFHRKHT 52 689************************98......578***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.2E-17 | 5 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-15 | 6 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-9 | 7 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 15.68 | 7 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.84E-13 | 64 | 131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 66 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.734 | 70 | 134 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 8.3E-17 | 72 | 128 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MDEVVTYKEC WHNHAAARGR VIYDGCLEYL VDQDNLICAC CGCHRNFHRK HTIFNGIPET 60 QTLDRVQGMR PKRKKRTTFS SEQRNKLICF AESVGWKPRK DKKNEIQSFC SKMGMTRRMF 120 LIWLSNNRHR AIKKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN11249.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028243397.1 | 3e-99 | zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A445JGR4 | 6e-98 | A0A445JGR4_GLYSO; Zinc-finger homeodomain protein 6 | ||||
STRING | GLYMA08G20170.2 | 3e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15282 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 7e-24 | homeobox protein 24 |
Publications ? help Back to Top | |||
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