PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN10043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 431aa MW: 48355.2 Da PI: 9.0143 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.2 | 7.6e-10 | 131 | 168 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + KHN10043.1 131 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 168 664459******************************88 PP | |||||||
2 | BELL | 114.2 | 6.8e-37 | 1 | 66 | 7 | 72 |
BELL 7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +kkakL+++l+eV++rY+qy+ q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi KHN10043.1 1 MKKAKLINMLDEVEQRYRQYHSQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 66 69***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-13 | 1 | 64 | IPR006563 | POX domain |
Pfam | PF07526 | 6.2E-31 | 1 | 63 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 109 | 172 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.91E-11 | 112 | 173 | No hit | No description |
SMART | SM00389 | 5.3E-9 | 112 | 176 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.64E-17 | 113 | 179 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-29 | 115 | 178 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.6E-18 | 129 | 168 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MKKAKLINML DEVEQRYRQY HSQMQIVISS FEQAAGIGSA RTYTALALQT ISKQFRCLKD 60 AITGQIRAAN KSLGEEDCFG AKIEGSRLKY VDHHLRQQRA IQQLGMINHN AWRPQRGLPE 120 RSVSVLRAWL FEHFLHPYPK DSDKHMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYLE 180 EMKDHELNGS EEKSSKNGED PATKTSTPQE KRAASEIESK SFNSKQDVSK NQNTPIVSTT 240 PPSTSPVGGS VKNQSGFSFM GSSELDGITQ GSPKKPRNHE ILRSPNRVPS INMDVKANEA 300 NNEQQLSMDL ERQNRDGYTF MGNQTNFISG FGQYPMEEIG RFDAEQFTPR FSGNNGVSLT 360 LGLPHCDTLS GTHQSFLPNQ NIQLGRGLDI GEPNQFGALN NSTSHSSAAF ESINMQNPKR 420 FAAQLLPDFV A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 118 | 176 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 118 | 176 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN10043.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031167 | 0.0 | KT031167.1 Glycine max clone HN_CCL_176 homeodomain/HOMEOBOX transcription factor (Glyma10g10040.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519115.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006575286.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006575287.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_014623899.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_014623905.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-139 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | I1JGH7 | 0.0 | I1JGH7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G35450.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-141 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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