PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09961.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 328aa    MW: 37235.7 Da    PI: 7.0346
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09961.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.7e-33682081128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 
                 lp+G++F+P+d+e++ e+L++kv ++       ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +W
  KHN09961.1  68 LPAGVKFDPNDQEIL-EHLEAKVFSDVpklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdkegsETRW 162
                 799***********9.99****9998856643322..22222333336**********.555666777******************744445555778* PP

         NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 ++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  KHN09961.1 163 HKTGKTRPVFV-GGAVKGFKKILVLYtnYGRQQKPEKTNWVMHQYHL 208
                 ***********.9*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3763227IPR003441NAC domain
PROSITE profilePS5100533.20868227IPR003441NAC domain
PfamPF023651.2E-1469208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTWCNDSEER GIDQLVAPAI TPTSTNNTTV LTHDHHRKPT EIRTITCPSC GHNIEFQDQT  60
GINDLPGLPA GVKFDPNDQE ILEHLEAKVF SDVPKLHPLI DEFIPTLEGE NGICYTHPEK  120
LPGVSKDGQI RHFFHRPSKA YTTGTRKRRK VHTDKEGSET RWHKTGKTRP VFVGGAVKGF  180
KKILVLYTNY GRQQKPEKTN WVMHQYHLGT SEEEKDGELV VSKIFYQTQP RQCGNNSIIK  240
QDLYDEERLM SNQISVHNDD DNNIIPRSNN ASALMDYYNP SFINYDQLGG RSNRESSAQL  300
IPNLAMQGDS SSFIRLAMDA TKAMLDRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09961.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187642.10.0NAC domain-containing protein 73-like
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0B2PKP40.0A0A0B2PKP4_GLYSO; NAC domain-containing protein 73 isoform A
STRINGGLYMA13G24320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-122NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]