PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN09838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 182aa MW: 21209.7 Da PI: 6.5199 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.9 | 6.3e-20 | 3 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+++++ +G ++Wkt+a + g++R++k+c++rw++yl KHN09838.1 3 RGAWTPEEDRKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYL 50 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 56 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l KHN09838.1 56 RGNISDEEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 101 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.26 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 2 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.85E-29 | 2 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-18 | 3 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 4 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.02E-11 | 5 | 50 | No hit | No description |
SMART | SM00717 | 5.0E-14 | 55 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.161 | 55 | 105 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.3E-15 | 56 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 58 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.36E-10 | 60 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MNRGAWTPEE DRKLAQCIEI HGAKRWKTVA IKSGLNRCGK SCRLRWLNYL RPNIKRGNIS 60 DEEEDLILRL HRLLGNRWSL IAGRLPGRTD NEIKNYWNSH LCKKVNQKVE KPESSTRHEI 120 IGQNDAGDNR AMSENEVEIN ESSNLDVSSF DVNEFFNFSE ESFGFDWLNK YLELDQIPQS 180 TE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 1 | 105 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN09838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB490776 | 1e-112 | AB490776.1 Lotus japonicus LjPAP mRNA for R2R3-MYB transcription factor LjPAP, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028210900.1 | 1e-133 | transcription factor MYB114-like | ||||
Swissprot | P10290 | 2e-49 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A445G6Q1 | 1e-131 | A0A445G6Q1_GLYSO; Anthocyanin regulatory C1 protein | ||||
STRING | GLYMA17G15270.1 | 1e-131 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-50 | myb domain protein 66 |