PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN09647.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 295aa MW: 34173.5 Da PI: 6.5172

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN09647.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.2e-53	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelv++yL++k++g+++ + +ikevd+yk++Pw+Lp+ + +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + ++ KHN09647.1 7 LPPGFRFHPTDEELVNHYLCRKCAGQPIAV-PIIKEVDLYKFDPWQLPEIGYYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGK--PKA 102 79************************99.88***********7666789*********************************98..778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkg+kt+W+mheyrl KHN09647.1 103 LGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-62	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	60.449	7	159	IPR003441	NAC domain
Pfam	PF02365	3.8E-28	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKGELELPPG FRFHPTDEEL VNHYLCRKCA GQPIAVPIIK EVDLYKFDPW QLPEIGYYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKAIGKP KALGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSASK KNNNNLRLDD WVLCRIYNKK GKIEKYNTTA PKMNLEMIHS 180 FEHENETKPE IHKLGNEQLL YTETSDSVPR LHTDSSSSEH VVSPDVRCER EVQSDPKWNN 240 DDYDLGLQLE NAFDFQFNYL DDNNLSVDDD PFGTVQYQMG QLSPLQDMFM YLQKM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-83	2	165	10	174	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN09647.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX569046	0.0	JX569046.1 Glycine max NAC transcription factor (NAC018) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001242877.2	0.0	NAC transcription factor
Refseq	XP_028236488.1	0.0	NAC domain-containing protein 2-like
Swissprot	Q39013	1e-121	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A445KAA8	0.0	A0A445KAA8_GLYSO; NAC domain-containing protein 2 isoform A
TrEMBL	U3LZE5	0.0	U3LZE5_SOYBN; NAC transcription factor
STRING	GLYMA06G16440.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-123	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]