PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN09619.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 204aa MW: 23658.4 Da PI: 4.4144 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.5 | 7.9e-34 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGf F+Ptdeelvv++L k++ + + ++i+++d ++ +Pw+L+ k+ + +++yfF+k + +nr+t++gyWk tg +k++ls+ ++ KHN09619.1 8 LPPGFLFSPTDEELVVHFLYCKASLIPYHP-NIIPDLDPSQLdDPWELNGKALLSGNQYYFFTKVN--------ENRTTENGYWKDTGVTKPILSTFDK 97 79*************************888.89*****999868****966667789999999874........5899******************99* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvf+ g+ap+g++t+Wvm+ey++ KHN09619.1 98 EVGMKKYLVFHIGEAPQGTETSWVMQEYHI 127 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-40 | 5 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.285 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-22 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEDESINLPP GFLFSPTDEE LVVHFLYCKA SLIPYHPNII PDLDPSQLDD PWELNGKALL 60 SGNQYYFFTK VNENRTTENG YWKDTGVTKP ILSTFDKEVG MKKYLVFHIG EAPQGTETSW 120 VMQEYHICSS EFDTASYRSV RRRRKHDQSW SKCVLCRVYE KIRSQQSVDC YRDDDDDGSG 180 SELSWLDEVY LSLDDDLKEI GMPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 6 | 166 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 6 | 166 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 6 | 166 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 6 | 166 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-32 | 6 | 166 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 6 | 166 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 6 | 166 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 6 | 166 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 6 | 166 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 6 | 166 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 6 | 166 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 6 | 166 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-32 | 6 | 166 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 6 | 166 | 15 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN09619.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661917 | 0.0 | EU661917.1 Glycine max NAC domain protein (NAC17) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526868.1 | 1e-152 | NAC domain-containing protein 104 isoform X1 | ||||
Refseq | XP_028236441.1 | 1e-152 | NAC domain-containing protein 104-like isoform X1 | ||||
Swissprot | Q8GWK6 | 5e-52 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A445KA59 | 1e-151 | A0A445KA59_GLYSO; NAC domain-containing protein 104 isoform A | ||||
TrEMBL | I1KBK3 | 1e-151 | I1KBK3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G15990.1 | 1e-152 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-51 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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