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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN09607.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 506aa MW: 54782.3 Da PI: 4.5837 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.4 | 2.4e-48 | 6 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +pG+rF+Ptd el+ ++Lk+kv+gkk++ e+i+evd+yk+ PwdLp + +k+++ +wyfF++r kky+tg r nrat++gyWk+tgkd+++ + +++ KHN09607.1 6 MPGYRFQPTDVELIEYFLKRKVRGKKFPS-EIIAEVDLYKFAPWDLPaMsLLKNGDLSWYFFCPRGKKYSTGGRLNRATEAGYWKTTGKDRPIEH-NNT 102 69**************************9.89***************5346667788*************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+ ktLvf++grap+g +tdWvmhe+rl KHN09607.1 103 VVGMIKTLVFHTGRAPRGDRTDWVMHEFRL 132 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.823 | 5 | 155 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-57 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-25 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MAKPKMPGYR FQPTDVELIE YFLKRKVRGK KFPSEIIAEV DLYKFAPWDL PAMSLLKNGD 60 LSWYFFCPRG KKYSTGGRLN RATEAGYWKT TGKDRPIEHN NTVVGMIKTL VFHTGRAPRG 120 DRTDWVMHEF RLDDKVLADE AVSQDAYVIC RVYQKEGPGP RNGAQYGKPY DEKEWETDEE 180 IDSVQSAPVA AVCAPVPIQP SESHISVANY THPSTSGCAG LTSVSCVSEL MPSCSTHPSA 240 LNNPVDSVSC VSELIPSCSA HPSAPNSQVG SLLCVSELMP SFSPPSTPKN PVYSVSCVSE 300 LMPSCLAHLL ASNNQVDSVP CVSEFMPSCS AHPSAPNSQV GSVSCVSGLI PSFLAHSSAS 360 NNQVGSVPCV PELVPSCLAH PSAPNNQADV GILPFLDCSI EDDDTLAVNE NNSIENVDDP 420 DQANNAERGP CSDPHAIFED LGDLNSLVGL GEGSFSCGQK NEYTTSAMLY TGDIFRSCDH 480 DFLELIDLET PPPLWQNKHG SDSQDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-46 | 7 | 156 | 17 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN09607.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661912 | 0.0 | EU661912.1 Glycine max NAC domain protein (NAC10) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028236427.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 1e-86 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A445KA53 | 0.0 | A0A445KA53_GLYSO; NAC domain-containing protein 82 isoform A | ||||
STRING | GLYMA06G15840.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 4e-87 | NAC domain containing protein 82 |
Publications ? help Back to Top | |||
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