PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09580.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 449aa    MW: 51480.7 Da    PI: 8.5325
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09580.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.49.1e-24179887
    trihelix  8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                +aL+++r+em+ ++++++ k+plWe+vs+k++e g++rs+k+Ckek+en+ k+++++keg+ ++ s+  +t+++f+qlea
  KHN09580.1  1 MALLKIRSEMDVAFKDANPKAPLWEQVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRFGK-SNGAKTYRFFEQLEA 79
                58************************************************************97.67778********85 PP
2trihelix95.45.2e-30276367187
    trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k+ev aLi++r+e + + + ++      +k+plWee+s +m++ g+ rs+k+Ckekwen+nk++k+ike +k++ +++s+tcpy+++lea
  KHN09580.1 276 RWPKDEVEALIRLRTEFDVQAQGNNnnsnngSKGPLWEEISLAMKSIGYDRSAKRCKEKWENINKYFKRIKEKNKRK-PQDSKTCPYYHHLEA 367
                 8**************8888887543345556********************************************96.9***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.564151IPR017877Myb-like domain
PfamPF138377.8E-15280No hitNo description
CDDcd122036.31E-16258No hitNo description
SMARTSM007172.3E-5273341IPR001005SANT/Myb domain
SuperFamilySSF466899.87E-5274354IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-4275338IPR009057Homeodomain-like
PfamPF138371.0E-20275368No hitNo description
CDDcd122037.45E-20275346No hitNo description
PROSITE profilePS500907.387275339IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MALLKIRSEM DVAFKDANPK APLWEQVSRK LAELGYNRSA KKCKEKFENV YKYHRRTKEG  60
RFGKSNGAKT YRFFEQLEAL DGNHSLPPPT TTTDNNNNVD DDDVILNAVP CSVIAAAAHE  120
HSSSTTSSSG KMKRKLTRFL EGLMREVIEK QETLQRKFME VLDKCEKDRM AREEAWKKEE  180
LERIKKEREL LAHERSIAAA KDEAVLAFLK KFAEAEGTVQ LLEKIQVQND KQKNKHQNGA  240
NANRGGDVTV VTDMDKQECG NNGVSVGNFV HMSSSRWPKD EVEALIRLRT EFDVQAQGNN  300
NNSNNGSKGP LWEEISLAMK SIGYDRSAKR CKEKWENINK YFKRIKEKNK RKPQDSKTCP  360
YYHHLEALYS KKPKKVVDHG NELKPEELLM HIMESQSQEQ QQEMQTQTQS SSEDAERDQD  420
QNQDQSGYQN QMVDNNNNNN SPSSIAIMS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF2217530.0EF221753.1 Glycine max trihelix transcription factor (GT-2A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526850.10.0trihelix transcription factor GT-2
RefseqXP_028236391.10.0trihelix transcription factor GT-2-like
SwissprotQ391172e-63TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A445KA000.0A0A445KA00_GLYSO; Trihelix transcription factor GT-2 isoform A
TrEMBLI1KBF60.0I1KBF6_SOYBN; Uncharacterized protein
STRINGGLYMA06G15500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-56Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]