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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN09490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 33192.8 Da PI: 8.1723 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.5 | 3.3e-50 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhP+deel+v+yL++kv++++l++ ++i+e+d+yk++Pw+Lp+k+ +e+ewyfF++rd+ky++g r+nr +sgyWkat +dk+++++ + + KHN09490.1 13 LPPGFRFHPSDEELIVHYLRNKVASSPLPA-SFITEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRPDASGYWKATVNDKPIFTScGMK 110 79****************************.89***************87778999********************999***************97778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 + +kk Lvfykgr pkg+ktdW+mheyrl KHN09490.1 111 SIAVKKALVFYKGRPPKGSKTDWIMHEYRL 140 8***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-56 | 9 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.301 | 13 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-26 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MFMDKDANIE IQLPPGFRFH PSDEELIVHY LRNKVASSPL PASFITEIDL YKYNPWELPS 60 KALFGEDEWY FFTPRDRKYP NGVRPNRPDA SGYWKATVND KPIFTSCGMK SIAVKKALVF 120 YKGRPPKGSK TDWIMHEYRL HDSMISNSRQ RGSMRLHSEY PMLPYILASK SALPNSIGMT 180 SSSGFGCNDD LETYASLHDD NLNKIIIGAQ FMAPVAEDLF NPLKRRNIEE NELDLYAPLN 240 KKPREVVDLG KQRLEKDVNK GYNFNNFDQW TSIMQPQELN SLAFTKYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-60 | 1 | 140 | 3 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN09490.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235460 | 5e-97 | AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553546.2 | 0.0 | NAC transcription factor 25 isoform X2 | ||||
Refseq | XP_028215986.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | O49255 | 3e-70 | NAC29_ARATH; NAC transcription factor 29 | ||||
TrEMBL | A0A445LDB3 | 0.0 | A0A445LDB3_GLYSO; NAC transcription factor 25 | ||||
STRING | GLYMA19G36421.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-72 | NAC-like, activated by AP3/PI |