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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN09146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 26362.1 Da PI: 8.7478 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.1 | 1.5e-43 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk++rrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql++el+++k+ KHN09146.1 8 PCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQNELHHAKK 106 7**********************************************************************************************9998 PP DUF260 100 e 100 e KHN09146.1 107 E 107 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.804 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-43 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0004088 | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSSSNSPCA ACKIQRRKCT QECVFAPYFP PDNPQRFAYV HKVFGASNVA KLLNELNAAQ 60 REDAVKSLAY EAEARLRDPV YGCVGLISIL QHRLKQLQNE LHHAKKELAS HIGSHTMLPP 120 APSLLPPEQQ PRTFSLFPFK PASTHQHDLF GFHDDGGASS ASHAGGFNNH LAAVFSPSPA 180 VDHAFSHAPM QSLTLPHHQH LMRSPMQPKP QTDPGWNTVP FFLLIPYFVI VTKLTTFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-46 | 4 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-46 | 4 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN09146.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028234187.1 | 1e-157 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 3e-62 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A0B2PIC4 | 1e-175 | A0A0B2PIC4_GLYSO; LOB domain-containing protein 36 | ||||
STRING | GLYMA06G11181.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-64 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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