PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08871.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 278aa    MW: 30559.7 Da    PI: 8.3804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08871.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00021213235223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp Cg  Fs+  +L+ H ++ H
  KHN08871.1 213 QCPQCGAKFSSVTTLVDHVQKvH 235
                 7******************9988 PP
2zf-C2H2163.5e-05250272223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C++ F+++  L+ H  + H
  KHN08871.1 250 VCPKCSRGFRDPVALVEHVERdH 272
                 7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.2E-11459No hitNo description
PROSITE profilePS510397.8371056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-101053IPR000058Zinc finger, AN1-type
SMARTSM001540.0161352IPR000058Zinc finger, AN1-type
PfamPF014281.3E-121351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.9E-1090149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.92E-993146No hitNo description
PROSITE profilePS510398.05798145IPR000058Zinc finger, AN1-type
SMARTSM001540.13101142IPR000058Zinc finger, AN1-type
PfamPF014286.7E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.0064212235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429212240IPR007087Zinc finger, C2H2
PfamPF138942.2E-4213235No hitNo description
PROSITE patternPS000280214235IPR007087Zinc finger, C2H2
SMARTSM003556.7249272IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663249277IPR007087Zinc finger, C2H2
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGTPEFPDLG KHCAVSDCKL IDFLPFTCDC CDQVYCLDHR SYNKHQCTKA DKQDVTVVIC  60
PLCAKGVRLV PDQDPNITWE NHVNTECDPS NYEKVTKKKK CPVPGCRVIL VFSNTIKCRD  120
CTVEHCLKHR FGPDHKCPGP TKVESSFSFM NLLNGSKKQE SKPKSSATSW STSFLNAASN  180
VRASAEAGVS KLSSWQTARG GVGQSHSSGQ VEQCPQCGAK FSSVTTLVDH VQKVHERSRN  240
RSGAKVTIDV CPKCSRGFRD PVALVEHVER DHGGSSRS
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08871.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984100.0BT098410.1 Soybean clone JCVI-FLGm-16J1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535903.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
RefseqXP_028184384.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-123SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0B2PHN50.0A0A0B2PHN5_GLYSO; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0R0HRK10.0A0A0R0HRK1_SOYBN; Uncharacterized protein
STRINGGLYMA10G17510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]