PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 315aa MW: 35416.9 Da PI: 4.5341

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN08860.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.8e-19	80	133	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq++ Le+ F +++++ e++ +LAk+lgL+ rqV +WFqNrRa++k KHN08860.1 80 KKRRLSVEQVRFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWK 133 56689************************************************9 PP
2	HD-ZIP_I/II	127.4	6.1e-41	79	171	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqv++LE+sF+ee+kLeperK +la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y+ lk++ ++L +e+ +L++e+++ KHN08860.1 79 EKKRRLSVEQVRFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKVKLKAEVAR 171 69**************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.55E-20	59	137	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.524	75	135	IPR001356	Homeobox domain
SMART	SM00389	1.9E-19	78	139	IPR001356	Homeobox domain
Pfam	PF00046	2.5E-16	80	133	IPR001356	Homeobox domain
CDD	cd00086	9.97E-19	80	136	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-19	82	143	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	106	115	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	110	133	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	115	131	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-15	135	176	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MAGGSVFCST SSSSSNLTTT TQPPLDSLFL SASSPFLGSR SIVSFGDVQG GKGCNDSFFS 60 SYDEHGDHED MDEYFHQPEK KRRLSVEQVR FLEKSFDEEN KLEPERKIRL AKELGLQPRQ 120 VAIWFQNRRA RWKTKQMEKD YDSLQASYND LKANYDNLLR EKVKLKAEVA RLTEKVLGRK 180 KNEGNLEQAE TNGLQEPLQK SLADSASEGE GSKVSIGACK QEDINSAKSD IFDSSESPHC 240 TDGIHSALLE TGDSSYVFEP DQSDVSQDEE DNLSKTLLPH YIFPKLEDVD YSDLPHGSCN 300 FGIPEEDQAI WSWPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARWKTKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN08860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY823671	0.0	AY823671.1 Glycine max HDZip I protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028229134.1	0.0	homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBL	A0A0B2PI54	0.0	A0A0B2PI54_GLYSO; Homeobox-leucine zipper protein HAT5
STRING	GLYMA06G20230.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1500	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-46	homeobox 1

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]