PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08771.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 361aa    MW: 39707.9 Da    PI: 8.3938
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08771.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-1660104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
       KHN08771.1  60 RERWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-1754108IPR009057Homeodomain-like
PROSITE profilePS5129421.34155109IPR017930Myb domain
TIGRFAMsTIGR015577.1E-1758107IPR006447Myb domain, plants
SMARTSM007174.7E-1359107IPR001005SANT/Myb domain
PfamPF002499.9E-1460103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-960102IPR009057Homeodomain-like
CDDcd001672.21E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAIQDQNGFN RSQGGPPIGG GVSLSSGVHS VTHIQLSDQF SCGNDYALKV RKPYTITKQR  60
ERWTDEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKLLR DPTGNNTNTV  120
ESIEIPPPRP KRKPVHPYPR KLVETPNKEI LIPEQLMKSN SLKSSDFDQE NQSPKSVLSG  180
VGSDSLGSSD SDTPYGSLSP MSSISGIHTS SFTRAEPKTT SEEAGMDTDS AHDEKPLMKF  240
KLPPNECVSI KDDTAEESSG RTFKLFGMTL FVTDTCKPSP TIEACKPIPL NIRVRCLSSS  300
MGDDGKLELL GHSTASETSA VSKLKVRVGP EACGKGFVPY KRCISVVTAD NREEQCIHLS  360
L
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08771.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311990.0KT031199.1 Glycine max clone HN_CCL_153 MYB/HD-like transcription factor (Glyma11g33180.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028215515.10.0protein REVEILLE 1-like
TrEMBLA0A0B2PHH50.0A0A0B2PHH5_GLYSO; Myb-like protein G
STRINGGLYMA18G05050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-48MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]