PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08275.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 609aa    MW: 66379.9 Da    PI: 7.3427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08275.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09201246144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      r++W++eEd +l  av+++G g+W+t a+      +R++ q+  rw
       KHN08275.1 201 RKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDfpIKRSATQLAQRW 246
                      789************************9865555559999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.943196254IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-11198251IPR009057Homeodomain-like
SuperFamilySSF466891.94E-10199252IPR009057Homeodomain-like
SMARTSM007173.3E-9200252IPR001005SANT/Myb domain
PfamPF002493.1E-8201246IPR001005SANT/Myb domain
CDDcd116601.49E-11202251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MPEKKNKKVS FTEEDAVTLM QRYDATTVFT LLQEVAHYPH PKIDWCELVK KSATEISNAR  60
EYQMLWRHLA YRHSLPEIFE DGDEPLDDDS DLECELEAFP PVSVECASEA AACVKVMIAS  120
RTLSESAPSS STIEAPLTIN VPVCHSSRTP IENSQPSNLM QGTSIIFPVT VQRQTLPTIS  180
LTDGIETKGI VGGNMASKRK RKAWSEEEDM QLRAAVQRWG EGNWATMAKG DDFPIKRSAT  240
QLAQRWSILR KKDGCTNTGT ITSTQYTTAE QLATRHSLSL ALDMPFKKLT APGMTDVKPS  300
TSVKNQAQIR NTTEKVSSSL VPPQQPSQQA LLGSSDLHAK SKLADEKPVL KGNLISDHVV  360
KSATATLGTR VDPLSNTISQ IKVAQVKNAT DTKPAVSSLT KPSIYTNLPS DPKNKHATSL  420
ADKGAQVKHA VDTKPAVSSL IKPSISTNLP SDPKNKHVTP LADKVPLKQV VNPTKELKVS  480
DPSTTPKEKV QENEPPKVTT GSQVDSSLEK GRFEKGQETS TPLVKISCGE EVSKDKANPV  540
VVCEEQGSVK KATENNNIDK GSQNLDHDKK IDSINQSSND QNANDKHVNL PVQDELSLSA  600
KVVKSDGEC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-112AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228399.10.0uncharacterized protein LOC114409223 isoform X2
TrEMBLK7KJ560.0K7KJ56_SOYBN; Uncharacterized protein
STRINGGLYMA04G10185.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.18e-60MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]