PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 27677.1 Da PI: 6.431 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.4e-13 | 2 | 35 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +v a++ +G++ W++Iar ++ gRt++ +k++w++ KHN07676.1 2 IVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 35 699********.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-15 | 1 | 37 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-4 | 1 | 38 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.62 | 1 | 40 | IPR017930 | Myb domain |
CDD | cd00167 | 1.14E-8 | 1 | 36 | No hit | No description |
Pfam | PF00249 | 2.1E-10 | 2 | 35 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.48E-9 | 2 | 38 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MIVAAHAIHG NKWAAIARLL PGRTDNAIKN HWNSTLRRRG VGHDTIKLES VSFMEDVSLE 60 KAKASSEDTL SCGDVSLKSS EGRDVSSMEI MDDKSDDKAQ TEGQIHHEVK DLPTLFRPVA 120 RVSAFNVYHS FDGTQPSTSI KRPVPMQGAV LQSSKPDMEF CRMLEGICGD QSVPHQCGHG 180 CCAAPDGRKS ESSLLGPEFV EFSEPPSFPN FELAAIATDI SNLAWLKSGL ESSSAKMMGN 240 TSGRVVSNGS QVHIGH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07676.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516915.1 | 0.0 | transcription factor MYB1 | ||||
Refseq | XP_028235689.1 | 0.0 | transcription factor MYB1-like | ||||
Swissprot | Q42575 | 2e-69 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A0B2PE43 | 0.0 | A0A0B2PE43_GLYSO; Myb-related protein B | ||||
STRING | GLYMA01G26650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 8e-72 | myb domain protein 1 |
Publications ? help Back to Top | |||
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