PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN07515.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 273aa MW: 29682.6 Da PI: 7.4348

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN07515.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	80.9	2e-25	4	86	1	78
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg KHN07515.1 4 SCNGCRVLRKGCSEDCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIYGSVG 86 6********************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.801	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-21	4	87	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEN 60 LRPAIFRSLL YEACGRIVNP IYGSVGEPIT PITSEAAANG RAPPLKAYDI RHVSKDENSA 120 NETPKAKTRS RFNRTGSTLI KPKASKGTPT GFVPIEPVEP ETANRTTSHE SGLSHLSEAA 180 VMVEGESKES ESDVSVETSN LFHEEPESVA KTSDRTGESG NEIGLELTLG FEPVSRVHHV 240 VPMKKRKIIA SKSYGDSAEK DSCKMELGLE YPA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN07515.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	7e-53	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028216990.1	0.0	LOB domain-containing protein 41-like
Swissprot	Q9M886	2e-91	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A0B2PDY8	0.0	A0A0B2PDY8_GLYSO; LOB domain-containing protein 41
STRING	GLYMA19G06280.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-85	LOB domain-containing protein 41

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]