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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
KHN07424.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C3H |
| Protein Properties |
Length: 295aa MW: 31244.5 Da PI: 9.606 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KHN07424.1 | genome | TCUHK | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 28.4 | 2.9e-09 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt++C+ f Ck+Gd+C+FaHg+
KHN07424.1 102 KTRICNKFNTAEGCKFGDKCHFAHGE 127
8***********************96 PP
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| 2 | zf-CCCH | 37 | 5.8e-12 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC +fa+ G C +GdrC+FaHg
KHN07424.1 262 FKTKLCENFAK-GSCTFGDRCHFAHG 286
69*********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 4.8 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.042 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.02E-5 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.4E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 1.6 | 42 | 59 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 7.5E-14 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.92E-8 | 99 | 131 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.6E-4 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.61 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-6 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 1.21E-15 | 157 | 240 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 9.5E-17 | 166 | 236 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 2.6E-12 | 167 | 237 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 15.158 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 5.8E-12 | 170 | 233 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.89E-15 | 170 | 233 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-16 | 258 | 292 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.46E-9 | 260 | 291 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.7E-8 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.765 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-9 | 262 | 286 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MDIRKRGRHE TGFSLNGGFK RSKQEMESLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHY 60
VPGGYNAVAH MMNLTPAAPP PPSRNVAALP HVPNGSAPSA VKTRICNKFN TAEGCKFGDK 120
CHFAHGEWEL GKHIAPSFDD HRTMGPTGVG RLAGRMEPPG PAASFGANST AKISVEASLA 180
GAIIGKGGVN SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ 240
MSAPPKTTPG VPGAPASHGS NFKTKLCENF AKGSCTFGDR CHFAHGASEL RKSGV
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