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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07294.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40535.1 Da PI: 7.7372 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.5 | 1.3e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeelvv+yLk+k+++ +l++ +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ +++ KHN07294.1 15 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTTyGHH 112 79****************************.88***************8888999**************************************998889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+ pkg+kt+W+mheyrl KHN07294.1 113 KVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-64 | 10 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.547 | 15 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MDSRDSSSGS QHPHLPPGFR FHPTDEELVV HYLKRKAASA PLPVAIIADV DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTTYG HHKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLVDDSFNSS SKPPPLVPHN KKNSLRLDDW VLCRIYKKSN 180 NTTLPRPPMM EHEEELSMDN MLPTMSTLSM ANNKMQNPKP PSRSTSYGPL GLENDDNFFE 240 GVLAVDQSMQ NGSDSHIFSP NSKGDNNNNN NNNASNFPIK RALITSQLWN ETGSPGSSSS 300 CKRFHGDLNC GCSNAEDNND SFISLLSQFP QNATFQPNAI HGSVEDDGAP RQQFHLHGIN 360 WN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-74 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-74 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-74 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-74 | 15 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-74 | 15 | 182 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-74 | 15 | 182 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-74 | 15 | 182 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07294.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-106 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528438.1 | 0.0 | NAC transcription factor 25 | ||||
Refseq | XP_028240994.1 | 0.0 | NAC transcription factor 25-like | ||||
Swissprot | Q8GY42 | 1e-105 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0B2PHV8 | 0.0 | A0A0B2PHV8_GLYSO; NAC domain-containing protein 18 | ||||
TrEMBL | I1KLG2 | 0.0 | I1KLG2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G31220.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-103 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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