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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 290aa MW: 32572.7 Da PI: 5.8403 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.2 | 5.8e-08 | 234 | 267 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + KHN07049.1 234 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 267 469*****************************87 PP | |||||||
2 | ELK | 29.9 | 1.2e-10 | 188 | 209 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+ +++++++E++ KHN07049.1 188 ELKHELKQGYKDKIVDIREEIL 209 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.2E-19 | 25 | 69 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.2E-18 | 27 | 67 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.5E-27 | 76 | 131 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-20 | 80 | 130 | IPR005541 | KNOX2 |
SMART | SM01188 | 5.1E-4 | 188 | 209 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 188 | 208 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.9E-6 | 188 | 209 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 208 | 271 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-11 | 210 | 275 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-16 | 210 | 273 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.74E-12 | 211 | 272 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 215 | 271 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.0E-18 | 228 | 267 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
GAGAESGDLK GETAPVDGLL NWQNARLKAE ILTHPLYEQL LSAHVACLRI ATPVDQLPRI 60 DAQLAQNVVA KYSAFGQAIV GDDKELDQFL SHYVLLLCSF KEQLQQHVRV HAMEAVMACW 120 EIEQSLQSLT GVSPGEGTGA TMSDDEDEQV DSDANLFDGA LDGPDSMGFG PLIPTENERS 180 LMERVRHELK HELKQGYKDK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE 240 EDKARLVQET GLQLKQINNW FINQRKRNWH SSPSTSTVLK SKRKSADQYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 211 | 275 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07049.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF128060 | 0.0 | EF128060.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581339.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X2 | ||||
Refseq | XP_028235208.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | P48000 | 1e-180 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A445K5M7 | 0.0 | A0A445K5M7_GLYSO; Homeobox protein knotted-1-like 3 isoform B | ||||
STRING | GLYMA06G06886.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 0.0 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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