![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN06858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 413aa MW: 46714 Da PI: 8.5421 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.5 | 1e-52 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ KHN06858.1 15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGSK 112 579***************************.89***************9888999***************************************95667 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg ktdW+mhe+rl KHN06858.1 113 CIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142 7***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-58 | 14 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.01 | 15 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-25 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 413 aa Download sequence Send to blast |
MEERNDNGEK LDEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKYDPWDL 60 PKMATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYKGRAAKG IKTDWMMHEF RLPSLTHPPS SLKKFMDKTI PANESWAICR IFKKTNATAQ 180 RALSHSWVSP LPETTTTNSD HMITTDHRDI NQFCQANMPF TKKTSLASQF CTFNHNDTQH 240 SSTTTSTTPC PLDVVASYNK PLMNPLMLYK SLDRLPFSNY GDLLTSGLIF SSPLETSTTT 300 NAKSSMDASS LLLSTSSSVL GEFSKNSEGI ITTNFGVLQE HGNDYQIPLL RDNMQGTFGN 360 HDDNNVLVKI PNVNVVPRVG DQQLETVRSI GFPFNIGDAW KPNMLWDASS LSL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-53 | 17 | 181 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-53 | 17 | 181 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-53 | 17 | 181 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-53 | 17 | 181 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-53 | 17 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-53 | 17 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-53 | 17 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-53 | 17 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-53 | 17 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-53 | 17 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-53 | 17 | 181 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-53 | 17 | 181 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-53 | 17 | 181 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-53 | 17 | 181 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN06858.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530701.1 | 0.0 | protein FEZ | ||||
Refseq | XP_028245792.1 | 0.0 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-112 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A0B2PGY5 | 0.0 | A0A0B2PGY5_GLYSO; Protein FEZ | ||||
TrEMBL | K7L9U3 | 0.0 | K7L9U3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G41260.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-111 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|