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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06442.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 96aa MW: 10969.7 Da PI: 10.3972 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.5 | 2.7e-31 | 25 | 75 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey++ KHN06442.1 25 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYAN 75 79***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.726 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-31 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.8E-42 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.33E-40 | 18 | 82 | No hit | No description |
PRINTS | PR00404 | 3.9E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MALPNQSMSS ESPQRKMGRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSFFH VINIVHAASF GKIEFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-21 | 17 | 82 | 1 | 66 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06442.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093434 | 1e-113 | BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006580183.1 | 9e-50 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_028232906.1 | 9e-50 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q40168 | 2e-40 | AG_SOLLC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A445JDG3 | 2e-56 | A0A445JDG3_GLYSO; Floral homeotic protein AGAMOUS isoform A | ||||
STRING | GLYMA05G29595.1 | 4e-49 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 6e-40 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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