PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN06431.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HSF

Protein Properties

Length: 402aa MW: 45918 Da PI: 4.6973

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06431.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.6	2.3e-34	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d+++++++sws +++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +l+++i+ KHN06431.1 14 FLAKTYEMVDDPSTDSVVSWSVTSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFVRGQPHLMKNIH 101 9******************999************************************9998.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k KHN06431.1 102 RRKP 105 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	8.16E-35	9	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.5E-62	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.7E-38	11	103	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.6E-19	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.5E-31	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-19	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-19	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDDAQGSSSS LPPFLAKTYE MVDDPSTDSV VSWSVTSKSF IVWNPPEFAR DLLPRFFKHN 60 NFSSFIRQLN TYGFRKVDPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPI 120 GEAERQSFTD EIEKLKHDKE QLLVELQKYQ HEWQAYEIQM HSSKDRLEKL EQNQQKMVSS 180 VSHVLQKPVI SVNILPLTET MDRKRRLPRS GHFYDEASVE DAMETSQMLP RENADNTTVL 240 TLNVERLDQL ESSMAFWEAI VHDIGDTFVQ IQSNMDFDES TSCADSPSIS CAQLDVEVRP 300 KSPGIDMNSE PTTAAVPEPV ASKEQPAGTT VAATGVNDVF WEQFLTEDPG ASETQEVQSE 360 RKEYDGRKNE GKPSDLNKFW WNKWNANNLP EQMGHVGQAE KT

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDDAQGSSSS LPPFLAKTYE MVDDPSTDSV VSWSVTSKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPI  120
GEAERQSFTD EIEKLKHDKE QLLVELQKYQ HEWQAYEIQM HSSKDRLEKL EQNQQKMVSS  180
VSHVLQKPVI SVNILPLTET MDRKRRLPRS GHFYDEASVE DAMETSQMLP RENADNTTVL  240
TLNVERLDQL ESSMAFWEAI VHDIGDTFVQ IQSNMDFDES TSCADSPSIS CAQLDVEVRP  300
KSPGIDMNSE PTTAAVPEPV ASKEQPAGTT VAATGVNDVF WEQFLTEDPG ASETQEVQSE  360
RKEYDGRKNE GKPSDLNKFW WNKWNANNLP EQMGHVGQAE KT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-24	9	103	24	129	Heat shock factor protein 1
5d5v_B	2e-24	9	103	24	129	Heat shock factor protein 1
5d5v_D	2e-24	9	103	24	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	DRKRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06431.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY052627	0.0	AY052627.1 Phaseolus acutifolius heat shock transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006580179.1	0.0	heat stress transcription factor A-4c
Refseq	XP_028232891.1	0.0	heat stress transcription factor A-4c-like
Swissprot	O49403	1e-125	HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBL	A0A445KPK9	0.0	A0A445KPK9_GLYSO; Heat stress transcription factor A-4a isoform A
TrEMBL	I1K431	0.0	I1K431_SOYBN; Uncharacterized protein
STRING	GLYMA05G29470.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3568	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-118	heat shock transcription factor A4A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]