PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 243aa MW: 27985.9 Da PI: 4.7106

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06343.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.2e-19	37	88	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe+++ + +++ +LA++lgL+ rqV +WFqN+Ra++k KHN06343.1 37 RRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 88 58*************************************************9 PP
2	HD-ZIP_I/II	120	1.3e-38	36	126	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s+eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy L+++y++l+++ e+L+ke+++L +l++ KHN06343.1 36 TRRFSDEQIKSLETMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKENQTLLIQLQK 126 79***********************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.8E-19	16	92	IPR009057	Homeodomain-like
SMART	SM00389	4.5E-15	28	94	IPR001356	Homeobox domain
PROSITE profile	PS50071	17.508	30	90	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-16	37	88	IPR001356	Homeobox domain
CDD	cd00086	1.03E-14	37	91	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-19	37	97	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	61	70	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	65	88	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	70	86	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.7E-17	90	132	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEYSQYTTYS AEGVEAETYT SSCTTPSRSK KRNNNTRRFS DEQIKSLETM FESESRLEPR 60 KKLQLARELG LQPRQVAIWF QNKRARWKSK QLERDYGILQ SNYNSLASRF EALKKENQTL 120 LIQLQKLNHL MQKPMEPGQR CTQVEAANSM DSESENGGTM KCEAEGKPSP SMEISEHLLG 180 VLSDDDTSIK VEDFGLEDEH GLLNFAKHVD GSLTSPEDWN AFESNDLLGQ STTDDYQWWD 240 FWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06343.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031175	0.0	KT031175.1 Glycine max clone HN_WYQ_3 homeodomain/HOMEOBOX transcription factor (Glyma07g05800.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028206109.1	1e-170	homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	5e-61	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A445GD53	1e-169	A0A445GD53_GLYSO; Homeobox-leucine zipper protein ATHB-12
STRING	GLYMA16G02390.1	1e-169	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	1e-60	homeobox 12

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]