PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN06248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36296.6 Da PI: 9.0726 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 31 | 75 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E +l+ +a + + + +W+++a++++ g+t +++ + KHN06248.1 31 KWTPAENKLFENALAVYDRDtpdRWHKVAEMIP-GKTVMDVVKQYK 75 8*****************99*************.***998887775 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.6e-14 | 142 | 186 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r +Rt+ q+ s+ qky KHN06248.1 142 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKY 186 8*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-4 | 23 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.38 | 27 | 81 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-9 | 28 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.84E-11 | 30 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-6 | 31 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.42E-8 | 31 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 134 | 191 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.5 | 135 | 191 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-16 | 136 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-17 | 138 | 190 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 139 | 189 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 142 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.53E-11 | 142 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MKWEMEILPP ASPYMYNSNW LLDDNRTNNT KWTPAENKLF ENALAVYDRD TPDRWHKVAE 60 MIPGKTVMDV VKQYKELEAD VCDIEAGLIP IPGYSSGTTT TSPFTLDWVN TSPAYDDGFK 120 GITAKRSSSG RPLEQERKKG VPWTEEEHKL FLLGLKKYGK GDWRNISRNY VITRTPTQVA 180 SHAQKYFIRQ LSGGKDKRRA SIHDITTVNL TETTRTSSDE SKRSASPQNS AMLSRHQQLN 240 SNAASSGLNF QWSDQPNAGV AMALNPAHEQ VFMSPYGLNS YGFKMQGQNL HRSSLHESSY 300 LGPQTPNMVF QMQPSQHYSH A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 32 | 96 | 11 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN06248.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-141 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551300.1 | 0.0 | transcription factor DIVARICATA | ||||
Refseq | XP_028215518.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-122 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0B2PF84 | 0.0 | A0A0B2PF84_GLYSO; Transcription factor DIVARICATA | ||||
TrEMBL | I1N015 | 0.0 | I1N015_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G07250.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-88 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|