PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06225.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 528aa    MW: 57458.3 Da    PI: 6.2894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06225.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-07199219526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C+ Gd C +aHg
  KHN06225.1 199 PCPEFRK-GSCSKGDACDYAHG 219
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.66E-9189No hitNo description
PfamPF127962.4E-6183IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.779165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-10170IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-10169IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.1023065IPR002110Ankyrin repeat
SMARTSM002480.00273062IPR002110Ankyrin repeat
SMARTSM003569.2E-5194220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216194221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4199221IPR000571Zinc finger, CCCH-type
SMARTSM003565.4229251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MIAAMFGSKS VLSYILGTGL VDVNRASGSD GATALHCAVA GGSSASLEII KLLLDASADV  60
STVDANGNRS CDLIFSVSNG VFNSRKRILQ AILEGADGID EACLPFEEAV GQMEKQQQQD  120
VDAFQVSKDG TEKKDYPVDL SLPDIKNGIY SSDEFRMYTF KVRPCSRAYS HDWTECPFVH  180
PGENARRRDP RRYQYSCVPC PEFRKGSCSK GDACDYAHGI FECWLHPAQY KTRLCKETGC  240
TRRVCFFAHN VEDLRPVYAS TGSAMPSPRS YSVSTPSLDP FTLGSPSSLI PPASTPPLTP  300
SRGSSPAGET MWHSQSHATV PTLQLPQSRL KSALNARDVE LDMELLGIEN HRLLMQQHLM  360
MEGMAGLSSP SNWNNSMPNS PSVGDYTGEF NRLAGVQPTN LDDIFGSQIQ YPARIQVHQN  420
VNQQLRGYPS NPYNSSVIGS PSFRVDPSGT AATMPLNPRN AAFANRSQSF VEPNMVNIDS  480
DFPSATSTAA EPSTFSGWGP SDGKLDWSIR GDELKKPSKS SSSGFLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551272.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_006602092.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_006602093.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_028212434.10.0zinc finger CCCH domain-containing protein 66-like
RefseqXP_028212435.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ41e-165C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0B2PA660.0A0A0B2PA66_GLYSO; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A445FPZ10.0A0A445FPZ1_GLYSO; Zinc finger CCCH domain-containing protein 66
TrEMBLI1MZZ20.0I1MZZ2_SOYBN; Uncharacterized protein
STRINGGLYMA18G06980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-161C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]