PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 190aa MW: 21416.7 Da PI: 9.1547

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN05763.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.7	6.9e-43	70	146	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adl++ak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++ KHN05763.1 70 CQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNP 146 **************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-36	62	131	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.753	67	144	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.4E-40	68	148	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-32	70	143	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEGRRVERKK TLFERVRKNS TVDEEVENEG EEEDESGVNI TEEEKKIGVS SGGGRRGSSG 60 GGGGVSPPSC QAERCGADLT DAKRYHRRHK VCEFHSKAPV VVVAGLRQRF CQQCSRFHDL 120 AEFDESKRSC RRRLAGHNER RRKTNPEAAN EGNSKGQHPK ETTHCRLADE RGRIQMNLTG 180 SSEYKSFNIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-37	57	143	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00634	PBM	Transfer from PK22320.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN05763.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235817	1e-146	AC235817.2 Glycine max clone GM_WBa0006O01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003540122.1	1e-136	squamosa promoter-binding protein 1
Refseq	XP_028193727.1	1e-136	squamosa promoter-binding protein 1-like
Swissprot	Q38741	4e-44	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A0B2PDS3	1e-135	A0A0B2PDS3_GLYSO; Squamosa promoter-binding protein 1
TrEMBL	I1LT75	1e-135	I1LT75_SOYBN; Uncharacterized protein
STRING	GLYMA12G27330.1	1e-136	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-40	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]