PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 88aa MW: 10057.7 Da PI: 8.7518

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN05631.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.6	2.6e-12	13	62	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ G+r+++ +g+W+ eI+d +r +lg++ taeeA ++ +l+g KHN05631.1 13 KFCGIRQRP-WGKWATEIWDlA----RRMCLWLGTYETAEEAIMVYDDTIIRLRG 62 667****.******54....359*****************9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.55E-23	12	69	No hit	No description
Gene3D	G3DSA:3.30.730.10	6.4E-22	13	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-16	13	70	IPR016177	DNA-binding domain
PROSITE profile	PS51032	17.899	13	70	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-23	13	76	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-5	14	62	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-7	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-7	36	52	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MRKKIIDPSS GKKFCGIRQR PWGKWATEIW DLARRMCLWL GTYETAEEAI MVYDDTIIRL 60 RGSDALTNFM LPQRDSPSPL SVVAEAPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-18	9	71	1	64	ATERF1
3gcc_A	3e-18	9	71	1	64	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN05631.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinins. {ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028236961.1	2e-34	ethylene-responsive transcription factor CRF2-like
Swissprot	Q9SUQ2	1e-22	CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBL	A0A0B2P8V4	1e-58	A0A0B2P8V4_GLYSO; Ethylene-responsive transcription factor CRF2
TrEMBL	A0A0R0K8K4	5e-58	A0A0R0K8K4_SOYBN; Uncharacterized protein
STRING	GLYMA04G41740.1	3e-29	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF35274	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23750.2	4e-25	cytokinin response factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Ckurshumova W,Berleth T Overcoming recalcitrance - Auxin response factor functions in plant regeneration. Plant Signal Behav, 2015. 10(7): p. e993293 [PMID:26098229] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Jeon J,Cho C,Lee MR,Van Binh N,Kim J CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis. Plant Cell, 2016. 28(8): p. 1828-43 [PMID:27432872]